Hb_000684_240

Information

Type -
Description -
Location Contig684: 253294-258900
Sequence    

Annotation

kegg
ID rcu:RCOM_0819620
description hypothetical protein
nr
ID XP_002525182.1
description hypothetical protein RCOM_0819620 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGR3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0819620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53989: 253568-254554 , PASA_asmbl_53990: 254567-255223 , PASA_asmbl_53991: 256305-256457 , PASA_asmbl_53992: 258331-258491 , PASA_asmbl_53993: 257212-258852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_240 0.0 - - hypothetical protein RCOM_0819620 [Ricinus communis]
2 Hb_006787_050 0.1713381238 - - hypothetical protein JCGZ_23988 [Jatropha curcas]
3 Hb_000326_040 0.1853072386 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
4 Hb_000926_020 0.2002239453 - - -
5 Hb_005211_160 0.2063092752 - - Protein PNS1, putative [Ricinus communis]
6 Hb_002681_030 0.2093875798 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
7 Hb_000421_180 0.2101199694 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000708_040 0.2186831064 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001847_020 0.2226601732 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
10 Hb_100414_010 0.222701447 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
11 Hb_001357_140 0.2250624278 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003893_040 0.2259305984 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
13 Hb_085226_010 0.2263479546 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
14 Hb_003016_020 0.2286657698 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
15 Hb_007432_030 0.2298008594 - - acyl-CoA thioesterase, putative [Ricinus communis]
16 Hb_032215_050 0.2300262394 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
17 Hb_000062_350 0.230174618 - - amino acid transporter, putative [Ricinus communis]
18 Hb_057183_040 0.2312951525 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
19 Hb_001315_020 0.2317110608 - - ring finger protein, putative [Ricinus communis]
20 Hb_027402_070 0.232445347 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_240 Hb_000684_240 Hb_006787_050 Hb_006787_050 Hb_000684_240--Hb_006787_050 Hb_000326_040 Hb_000326_040 Hb_000684_240--Hb_000326_040 Hb_000926_020 Hb_000926_020 Hb_000684_240--Hb_000926_020 Hb_005211_160 Hb_005211_160 Hb_000684_240--Hb_005211_160 Hb_002681_030 Hb_002681_030 Hb_000684_240--Hb_002681_030 Hb_000421_180 Hb_000421_180 Hb_000684_240--Hb_000421_180 Hb_000208_120 Hb_000208_120 Hb_006787_050--Hb_000208_120 Hb_006787_050--Hb_000421_180 Hb_006787_050--Hb_000926_020 Hb_000708_040 Hb_000708_040 Hb_006787_050--Hb_000708_040 Hb_001322_050 Hb_001322_050 Hb_006787_050--Hb_001322_050 Hb_000326_040--Hb_000926_020 Hb_010174_080 Hb_010174_080 Hb_000326_040--Hb_010174_080 Hb_000094_280 Hb_000094_280 Hb_000326_040--Hb_000094_280 Hb_003862_050 Hb_003862_050 Hb_000326_040--Hb_003862_050 Hb_000000_210 Hb_000000_210 Hb_000326_040--Hb_000000_210 Hb_000025_030 Hb_000025_030 Hb_000326_040--Hb_000025_030 Hb_001847_020 Hb_001847_020 Hb_000926_020--Hb_001847_020 Hb_000721_010 Hb_000721_010 Hb_000926_020--Hb_000721_010 Hb_000008_470 Hb_000008_470 Hb_000926_020--Hb_000008_470 Hb_000123_120 Hb_000123_120 Hb_000926_020--Hb_000123_120 Hb_188279_010 Hb_188279_010 Hb_000926_020--Hb_188279_010 Hb_000926_020--Hb_003862_050 Hb_000139_380 Hb_000139_380 Hb_005211_160--Hb_000139_380 Hb_170193_010 Hb_170193_010 Hb_005211_160--Hb_170193_010 Hb_000041_150 Hb_000041_150 Hb_005211_160--Hb_000041_150 Hb_127003_010 Hb_127003_010 Hb_005211_160--Hb_127003_010 Hb_085863_020 Hb_085863_020 Hb_005211_160--Hb_085863_020 Hb_000080_190 Hb_000080_190 Hb_005211_160--Hb_000080_190 Hb_001300_210 Hb_001300_210 Hb_002681_030--Hb_001300_210 Hb_004228_080 Hb_004228_080 Hb_002681_030--Hb_004228_080 Hb_032208_020 Hb_032208_020 Hb_002681_030--Hb_032208_020 Hb_002681_030--Hb_000326_040 Hb_007432_030 Hb_007432_030 Hb_002681_030--Hb_007432_030 Hb_001960_040 Hb_001960_040 Hb_000421_180--Hb_001960_040 Hb_001357_140 Hb_001357_140 Hb_000421_180--Hb_001357_140 Hb_114893_020 Hb_114893_020 Hb_000421_180--Hb_114893_020 Hb_001357_180 Hb_001357_180 Hb_000421_180--Hb_001357_180 Hb_002188_130 Hb_002188_130 Hb_000421_180--Hb_002188_130 Hb_000317_490 Hb_000317_490 Hb_000421_180--Hb_000317_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1114 1.3394 6.17584 6.38775 1.64313 8.08137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3882 7.7856 20.9076 2.02557 1.48005

CAGE analysis