Hb_000684_270

Information

Type -
Description -
Location Contig684: 285349-289069
Sequence    

Annotation

kegg
ID vvi:100253345
description probable DNA helicase MCM8
nr
ID XP_012082281.1
description PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
swissprot
ID Q9SF37
description Probable DNA helicase MCM8 OS=Arabidopsis thaliana GN=MCM8 PE=2 SV=2
trembl
ID A0A067JYV0
description DNA helicase OS=Jatropha curcas GN=JCGZ_16461 PE=3 SV=1
Gene Ontology
ID GO:0003677
description probable dna helicase mcm8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53997: 267128-291537 , PASA_asmbl_53998: 288402-291537 , PASA_asmbl_53999: 284840-285338 , PASA_asmbl_54000: 287324-287876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_270 0.0 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
2 Hb_002234_070 0.0798984093 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
3 Hb_000525_020 0.0903645571 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_008771_030 0.0929841872 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
5 Hb_077354_010 0.0935401245 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
6 Hb_004871_020 0.0953310438 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
7 Hb_029904_030 0.0986629352 - - aspartate aminotransferase, putative [Ricinus communis]
8 Hb_001616_040 0.0988726782 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
9 Hb_006831_130 0.1028380682 - - catalytic, putative [Ricinus communis]
10 Hb_004102_070 0.1037580648 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
11 Hb_144598_020 0.1048700094 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
12 Hb_000317_070 0.1050098078 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
13 Hb_010175_040 0.105226274 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
14 Hb_001476_080 0.1089663413 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
15 Hb_000635_180 0.1089996475 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
16 Hb_003125_150 0.1107862694 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
17 Hb_000111_330 0.1108570467 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
18 Hb_001504_110 0.1115955895 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
19 Hb_001279_310 0.1117783171 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
20 Hb_003018_120 0.1119807925 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]

Gene co-expression network

sample Hb_000684_270 Hb_000684_270 Hb_002234_070 Hb_002234_070 Hb_000684_270--Hb_002234_070 Hb_000525_020 Hb_000525_020 Hb_000684_270--Hb_000525_020 Hb_008771_030 Hb_008771_030 Hb_000684_270--Hb_008771_030 Hb_077354_010 Hb_077354_010 Hb_000684_270--Hb_077354_010 Hb_004871_020 Hb_004871_020 Hb_000684_270--Hb_004871_020 Hb_029904_030 Hb_029904_030 Hb_000684_270--Hb_029904_030 Hb_002234_070--Hb_077354_010 Hb_134949_020 Hb_134949_020 Hb_002234_070--Hb_134949_020 Hb_144598_020 Hb_144598_020 Hb_002234_070--Hb_144598_020 Hb_003125_150 Hb_003125_150 Hb_002234_070--Hb_003125_150 Hb_000987_070 Hb_000987_070 Hb_002234_070--Hb_000987_070 Hb_000331_470 Hb_000331_470 Hb_000525_020--Hb_000331_470 Hb_000525_020--Hb_004871_020 Hb_091433_020 Hb_091433_020 Hb_000525_020--Hb_091433_020 Hb_001863_430 Hb_001863_430 Hb_000525_020--Hb_001863_430 Hb_003787_010 Hb_003787_010 Hb_000525_020--Hb_003787_010 Hb_008771_030--Hb_003787_010 Hb_000111_330 Hb_000111_330 Hb_008771_030--Hb_000111_330 Hb_008771_030--Hb_000525_020 Hb_002518_080 Hb_002518_080 Hb_008771_030--Hb_002518_080 Hb_000417_360 Hb_000417_360 Hb_008771_030--Hb_000417_360 Hb_033594_110 Hb_033594_110 Hb_077354_010--Hb_033594_110 Hb_003018_120 Hb_003018_120 Hb_077354_010--Hb_003018_120 Hb_000297_230 Hb_000297_230 Hb_077354_010--Hb_000297_230 Hb_006831_130 Hb_006831_130 Hb_077354_010--Hb_006831_130 Hb_000317_070 Hb_000317_070 Hb_004871_020--Hb_000317_070 Hb_153544_010 Hb_153544_010 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_029904_030--Hb_000111_330 Hb_002798_050 Hb_002798_050 Hb_029904_030--Hb_002798_050 Hb_015807_100 Hb_015807_100 Hb_029904_030--Hb_015807_100 Hb_029904_030--Hb_004871_020 Hb_001633_030 Hb_001633_030 Hb_029904_030--Hb_001633_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03597 2.29081 3.87237 2.95394 1.59118 3.81174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.431 10.1773 5.03604 3.14323 1.56688

CAGE analysis