Hb_000684_290

Information

Type -
Description -
Location Contig684: 291879-306052
Sequence    

Annotation

kegg
ID rcu:RCOM_0819650
description ubiquitin protein ligase E3a, putative
nr
ID XP_002525185.1
description ubiquitin protein ligase E3a, putative [Ricinus communis]
swissprot
ID Q9LYZ7
description E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=3 SV=1
trembl
ID B9SGR6
description Ubiquitin protein ligase E3a, putative OS=Ricinus communis GN=RCOM_0819650 PE=4 SV=1
Gene Ontology
ID GO:0004842
description ubiquitin protein ligase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54002: 301640-301792 , PASA_asmbl_54003: 302102-303740 , PASA_asmbl_54004: 304145-306025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_290 0.0 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
2 Hb_002005_080 0.0753861561 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
3 Hb_017358_040 0.0851209735 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
4 Hb_000340_490 0.0890350543 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
5 Hb_000106_120 0.0891830833 - - hypothetical protein glysoja_007050 [Glycine soja]
6 Hb_002477_090 0.0901689866 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
7 Hb_001761_130 0.0906588255 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
8 Hb_001575_010 0.0915463452 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002639_080 0.0978091217 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
10 Hb_185830_070 0.1011274659 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
11 Hb_071130_010 0.1016633851 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
12 Hb_000083_270 0.1036314732 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
13 Hb_001105_160 0.1051701452 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
14 Hb_000950_060 0.1056353589 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
15 Hb_000069_120 0.1067817013 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
16 Hb_003927_010 0.1069688079 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
17 Hb_003498_130 0.1074929548 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
18 Hb_041327_010 0.1083106932 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
19 Hb_000069_410 0.1100670914 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
20 Hb_002170_050 0.1102959899 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_290 Hb_000684_290 Hb_002005_080 Hb_002005_080 Hb_000684_290--Hb_002005_080 Hb_017358_040 Hb_017358_040 Hb_000684_290--Hb_017358_040 Hb_000340_490 Hb_000340_490 Hb_000684_290--Hb_000340_490 Hb_000106_120 Hb_000106_120 Hb_000684_290--Hb_000106_120 Hb_002477_090 Hb_002477_090 Hb_000684_290--Hb_002477_090 Hb_001761_130 Hb_001761_130 Hb_000684_290--Hb_001761_130 Hb_001006_340 Hb_001006_340 Hb_002005_080--Hb_001006_340 Hb_041327_010 Hb_041327_010 Hb_002005_080--Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_002005_080--Hb_002639_080 Hb_000083_270 Hb_000083_270 Hb_002005_080--Hb_000083_270 Hb_003498_130 Hb_003498_130 Hb_002005_080--Hb_003498_130 Hb_000069_120 Hb_000069_120 Hb_017358_040--Hb_000069_120 Hb_017358_040--Hb_001761_130 Hb_071130_010 Hb_071130_010 Hb_017358_040--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_017358_040--Hb_000230_260 Hb_000723_220 Hb_000723_220 Hb_017358_040--Hb_000723_220 Hb_003060_060 Hb_003060_060 Hb_017358_040--Hb_003060_060 Hb_000340_490--Hb_002639_080 Hb_000340_490--Hb_071130_010 Hb_004934_050 Hb_004934_050 Hb_000340_490--Hb_004934_050 Hb_000340_490--Hb_000069_120 Hb_000340_490--Hb_000106_120 Hb_001628_070 Hb_001628_070 Hb_000340_490--Hb_001628_070 Hb_000106_120--Hb_002477_090 Hb_006909_010 Hb_006909_010 Hb_000106_120--Hb_006909_010 Hb_000106_120--Hb_002639_080 Hb_000106_120--Hb_000069_120 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_002477_090--Hb_004934_050 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_172632_110 Hb_172632_110 Hb_001761_130--Hb_172632_110 Hb_006831_040 Hb_006831_040 Hb_001761_130--Hb_006831_040 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_010174_110 Hb_010174_110 Hb_001761_130--Hb_010174_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31447 7.8473 1.7406 4.26439 5.49148 6.65398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51763 2.97006 3.87449 12.5937 5.19195

CAGE analysis