Hb_000684_360

Information

Type transcription factor
Description TF Family: AP2
Location Contig684: 361339-364205
Sequence    

Annotation

kegg
ID rcu:RCOM_0819800
description Floral homeotic protein APETALA2, putative (EC:1.3.1.74)
nr
ID KDP29065.1
description hypothetical protein JCGZ_16454 [Jatropha curcas]
swissprot
ID Q9SK03
description Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2
trembl
ID A0A067K9U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16454 PE=4 SV=1
Gene Ontology
ID GO:0005634
description floral homeotic protein apetala 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54018: 362745-363579 , PASA_asmbl_54019: 363637-363906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_360 0.0 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
2 Hb_003125_180 0.0919039332 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
3 Hb_053575_020 0.0945061633 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
4 Hb_169051_010 0.097931557 - - JHL06B08.1 [Jatropha curcas]
5 Hb_000157_070 0.1093125939 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
6 Hb_000702_060 0.1117847825 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029879_120 0.1148376307 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000094_370 0.1159332729 - - -
9 Hb_000227_330 0.116863235 - - Acyl-CoA synthetase [Ricinus communis]
10 Hb_012325_010 0.1194353142 - - hypothetical protein RCOM_0068670 [Ricinus communis]
11 Hb_002213_090 0.1206628765 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
12 Hb_011032_010 0.12267574 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
13 Hb_003626_040 0.1249845257 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
14 Hb_001322_180 0.1267868984 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
15 Hb_001500_070 0.1304575574 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005181_180 0.1305532617 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001900_060 0.1307557254 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
18 Hb_002851_010 0.1336570652 - - sugar transporter, putative [Ricinus communis]
19 Hb_003626_050 0.1339093553 - - malic enzyme, putative [Ricinus communis]
20 Hb_020805_180 0.1343970344 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_360 Hb_000684_360 Hb_003125_180 Hb_003125_180 Hb_000684_360--Hb_003125_180 Hb_053575_020 Hb_053575_020 Hb_000684_360--Hb_053575_020 Hb_169051_010 Hb_169051_010 Hb_000684_360--Hb_169051_010 Hb_000157_070 Hb_000157_070 Hb_000684_360--Hb_000157_070 Hb_000702_060 Hb_000702_060 Hb_000684_360--Hb_000702_060 Hb_029879_120 Hb_029879_120 Hb_000684_360--Hb_029879_120 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_003125_180--Hb_169051_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_003125_180--Hb_029879_120 Hb_000674_010 Hb_000674_010 Hb_003125_180--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_003125_180--Hb_003058_200 Hb_053575_020--Hb_011032_010 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110 Hb_169051_010--Hb_011032_010 Hb_146510_010 Hb_146510_010 Hb_169051_010--Hb_146510_010 Hb_001322_180 Hb_001322_180 Hb_169051_010--Hb_001322_180 Hb_169051_010--Hb_053575_020 Hb_135959_010 Hb_135959_010 Hb_000157_070--Hb_135959_010 Hb_020805_180 Hb_020805_180 Hb_000157_070--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_001702_050 Hb_001702_050 Hb_029879_120--Hb_001702_050 Hb_000019_010 Hb_000019_010 Hb_029879_120--Hb_000019_010 Hb_011174_080 Hb_011174_080 Hb_029879_120--Hb_011174_080 Hb_001235_130 Hb_001235_130 Hb_029879_120--Hb_001235_130 Hb_029879_120--Hb_000157_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.998684 4.02285 1.88533 4.24543 1.02472 1.31868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55192 0.805822 0.321212 7.63137 3.78117

CAGE analysis