Hb_000684_370

Information

Type -
Description -
Location Contig684: 368216-370653
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_370 0.0 - - -
2 Hb_000014_100 0.1631158271 - - -
3 Hb_005657_010 0.1653052465 - - -
4 Hb_001767_010 0.1717706497 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
5 Hb_143629_050 0.1817799522 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019153_040 0.1881909651 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
7 Hb_004800_160 0.191041186 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
8 Hb_030982_040 0.1923982427 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_163950_010 0.1925883606 - - -
10 Hb_000072_280 0.1942826841 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
11 Hb_004907_130 0.1967616376 - - -
12 Hb_006452_060 0.1974871117 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_003751_110 0.1983884413 - - unknown [Lotus japonicus]
14 Hb_003747_240 0.1998672011 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
15 Hb_114684_020 0.2004674833 - - beta-1,3-glucanase [Hevea brasiliensis]
16 Hb_008376_010 0.2020078529 - - -
17 Hb_007245_090 0.2035813639 - - -
18 Hb_001437_240 0.2052593505 - - -
19 Hb_000809_050 0.2061971218 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
20 Hb_000729_060 0.2086105572 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000684_370 Hb_000684_370 Hb_000014_100 Hb_000014_100 Hb_000684_370--Hb_000014_100 Hb_005657_010 Hb_005657_010 Hb_000684_370--Hb_005657_010 Hb_001767_010 Hb_001767_010 Hb_000684_370--Hb_001767_010 Hb_143629_050 Hb_143629_050 Hb_000684_370--Hb_143629_050 Hb_019153_040 Hb_019153_040 Hb_000684_370--Hb_019153_040 Hb_004800_160 Hb_004800_160 Hb_000684_370--Hb_004800_160 Hb_007245_090 Hb_007245_090 Hb_000014_100--Hb_007245_090 Hb_006499_010 Hb_006499_010 Hb_000014_100--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030 Hb_011174_070 Hb_011174_070 Hb_005657_010--Hb_011174_070 Hb_003125_050 Hb_003125_050 Hb_005657_010--Hb_003125_050 Hb_005657_010--Hb_001767_010 Hb_001001_160 Hb_001001_160 Hb_005657_010--Hb_001001_160 Hb_011609_190 Hb_011609_190 Hb_005657_010--Hb_011609_190 Hb_005657_010--Hb_003747_240 Hb_114684_020 Hb_114684_020 Hb_001767_010--Hb_114684_020 Hb_000427_030 Hb_000427_030 Hb_001767_010--Hb_000427_030 Hb_001767_010--Hb_011174_070 Hb_003001_030 Hb_003001_030 Hb_001767_010--Hb_003001_030 Hb_000249_110 Hb_000249_110 Hb_001767_010--Hb_000249_110 Hb_000380_180 Hb_000380_180 Hb_001767_010--Hb_000380_180 Hb_010931_110 Hb_010931_110 Hb_143629_050--Hb_010931_110 Hb_030620_010 Hb_030620_010 Hb_143629_050--Hb_030620_010 Hb_006452_060 Hb_006452_060 Hb_143629_050--Hb_006452_060 Hb_004032_240 Hb_004032_240 Hb_143629_050--Hb_004032_240 Hb_000958_010 Hb_000958_010 Hb_143629_050--Hb_000958_010 Hb_030982_040 Hb_030982_040 Hb_143629_050--Hb_030982_040 Hb_164732_010 Hb_164732_010 Hb_019153_040--Hb_164732_010 Hb_002983_020 Hb_002983_020 Hb_019153_040--Hb_002983_020 Hb_019153_040--Hb_004032_240 Hb_009680_030 Hb_009680_030 Hb_019153_040--Hb_009680_030 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010 Hb_000861_040 Hb_000861_040 Hb_004800_160--Hb_000861_040 Hb_005357_150 Hb_005357_150 Hb_004800_160--Hb_005357_150 Hb_000025_480 Hb_000025_480 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_004800_160--Hb_000427_030 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.683221 0.0275026 0.0639669 0.0247797 1.03953 0.192823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.50162 0.345144 0.985927 0.258966 0

CAGE analysis