Hb_000684_380

Information

Type -
Description -
Location Contig684: 374857-377272
Sequence    

Annotation

kegg
ID vvi:100255110
description 60S ribosomal protein L4
nr
ID XP_002274975.1
description PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
swissprot
ID Q9SF40
description 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1
trembl
ID F6HQV3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g03200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54020: 374931-377212
cDNA
(Sanger)
(ID:Location)		 006_G02.ab1: 376373-377212 , 018_B11.ab1: 376562-377183 , 037_F24.ab1: 376386-377202 , 038_O06.ab1: 376474-377202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_380 0.0 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
2 Hb_024958_010 0.0549931626 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
3 Hb_000589_120 0.0591454358 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
4 Hb_000768_090 0.0622320806 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
5 Hb_004058_030 0.0648885238 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
6 Hb_001359_050 0.0674519891 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000331_550 0.0674861762 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
8 Hb_002320_040 0.0695914949 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
9 Hb_003304_020 0.0703806907 - - Polyadenylate-binding protein RBP47C [Glycine soja]
10 Hb_001163_050 0.0713170816 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
11 Hb_004837_240 0.0717565019 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
12 Hb_000460_030 0.072126352 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
13 Hb_029388_020 0.0722497568 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002600_020 0.0755294014 - - unnamed protein product [Vitis vinifera]
15 Hb_000757_060 0.0757590559 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
16 Hb_000317_240 0.0763567546 - - PREDICTED: protein DYAD [Jatropha curcas]
17 Hb_002936_010 0.0768000867 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
18 Hb_008554_060 0.0789403964 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
19 Hb_000431_170 0.0795976716 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
20 Hb_000417_130 0.0806146274 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_380 Hb_000684_380 Hb_024958_010 Hb_024958_010 Hb_000684_380--Hb_024958_010 Hb_000589_120 Hb_000589_120 Hb_000684_380--Hb_000589_120 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_004058_030 Hb_004058_030 Hb_000684_380--Hb_004058_030 Hb_001359_050 Hb_001359_050 Hb_000684_380--Hb_001359_050 Hb_000331_550 Hb_000331_550 Hb_000684_380--Hb_000331_550 Hb_002936_010 Hb_002936_010 Hb_024958_010--Hb_002936_010 Hb_024958_010--Hb_001359_050 Hb_002320_040 Hb_002320_040 Hb_024958_010--Hb_002320_040 Hb_008725_230 Hb_008725_230 Hb_024958_010--Hb_008725_230 Hb_006570_080 Hb_006570_080 Hb_024958_010--Hb_006570_080 Hb_014109_040 Hb_014109_040 Hb_000589_120--Hb_014109_040 Hb_008554_060 Hb_008554_060 Hb_000589_120--Hb_008554_060 Hb_007576_080 Hb_007576_080 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_000317_240 Hb_000317_240 Hb_000768_090--Hb_000317_240 Hb_000039_220 Hb_000039_220 Hb_000768_090--Hb_000039_220 Hb_000468_060 Hb_000468_060 Hb_000768_090--Hb_000468_060 Hb_005054_350 Hb_005054_350 Hb_000768_090--Hb_005054_350 Hb_000215_110 Hb_000215_110 Hb_000768_090--Hb_000215_110 Hb_003304_020 Hb_003304_020 Hb_004058_030--Hb_003304_020 Hb_000003_230 Hb_000003_230 Hb_004058_030--Hb_000003_230 Hb_002681_100 Hb_002681_100 Hb_004058_030--Hb_002681_100 Hb_006615_240 Hb_006615_240 Hb_004058_030--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_004058_030--Hb_003582_060 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_000173_280 Hb_000173_280 Hb_001359_050--Hb_000173_280 Hb_001163_050 Hb_001163_050 Hb_000331_550--Hb_001163_050 Hb_000373_070 Hb_000373_070 Hb_000331_550--Hb_000373_070 Hb_156279_020 Hb_156279_020 Hb_000331_550--Hb_156279_020 Hb_011995_010 Hb_011995_010 Hb_000331_550--Hb_011995_010 Hb_015934_040 Hb_015934_040 Hb_000331_550--Hb_015934_040 Hb_002754_010 Hb_002754_010 Hb_000331_550--Hb_002754_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.5784 90.7025 112.456 86.2921 91.2716 86.9922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.121 156.733 109.273 119.501 55.2777

CAGE analysis