Hb_000684_390

Information

Type -
Description -
Location Contig684: 379029-398276
Sequence    

Annotation

kegg
ID tcc:TCM_022075
description Hydroxyproline-rich glycoprotein family protein
nr
ID XP_012085966.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
swissprot
ID Q9LZ00
description Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana GN=MED4 PE=1 SV=1
trembl
ID A0A067K378
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22460 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mediator of rna polymerase ii transcription subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54021: 388854-395936 , PASA_asmbl_54022: 389038-389305 , PASA_asmbl_54023: 388367-398032 , PASA_asmbl_54024: 388367-398032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_390 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
2 Hb_000920_310 0.0672467117 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_000000_310 0.0791818362 - - metalloendopeptidase, putative [Ricinus communis]
4 Hb_001628_120 0.0847097709 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
5 Hb_003682_070 0.0914118266 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
6 Hb_000107_250 0.0986834781 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
7 Hb_001017_030 0.0999150112 - - copine, putative [Ricinus communis]
8 Hb_004306_110 0.1021223185 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
9 Hb_026549_070 0.102239046 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
10 Hb_003746_010 0.1022726514 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000300_510 0.1024165207 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
12 Hb_000120_860 0.1029687112 - - nucellin, putative [Ricinus communis]
13 Hb_130589_010 0.1034065149 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_000585_110 0.1083950353 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
15 Hb_000062_400 0.1091875169 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001976_030 0.1093094141 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
17 Hb_001029_040 0.1095566651 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
18 Hb_000417_390 0.1095853542 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
19 Hb_001009_260 0.1115606343 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
20 Hb_042083_040 0.1117746127 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000684_390 Hb_000684_390 Hb_000920_310 Hb_000920_310 Hb_000684_390--Hb_000920_310 Hb_000000_310 Hb_000000_310 Hb_000684_390--Hb_000000_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_003682_070 Hb_003682_070 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_002955_020 Hb_002955_020 Hb_000920_310--Hb_002955_020 Hb_000860_060 Hb_000860_060 Hb_000920_310--Hb_000860_060 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_004306_110 Hb_004306_110 Hb_000920_310--Hb_004306_110 Hb_000920_310--Hb_000000_310 Hb_000000_310--Hb_003682_070 Hb_000000_310--Hb_000107_250 Hb_000300_510 Hb_000300_510 Hb_000000_310--Hb_000300_510 Hb_000120_860 Hb_000120_860 Hb_000000_310--Hb_000120_860 Hb_000922_060 Hb_000922_060 Hb_000000_310--Hb_000922_060 Hb_001976_030 Hb_001976_030 Hb_001628_120--Hb_001976_030 Hb_042083_040 Hb_042083_040 Hb_001628_120--Hb_042083_040 Hb_000049_180 Hb_000049_180 Hb_001628_120--Hb_000049_180 Hb_007441_310 Hb_007441_310 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_003682_070--Hb_000922_060 Hb_003682_070--Hb_000300_510 Hb_003682_070--Hb_000107_250 Hb_003682_070--Hb_000120_860 Hb_004735_020 Hb_004735_020 Hb_003682_070--Hb_004735_020 Hb_073973_120 Hb_073973_120 Hb_000107_250--Hb_073973_120 Hb_022693_130 Hb_022693_130 Hb_000107_250--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_000107_250--Hb_002053_050 Hb_004705_160 Hb_004705_160 Hb_000107_250--Hb_004705_160 Hb_001017_030--Hb_000920_310 Hb_116349_120 Hb_116349_120 Hb_001017_030--Hb_116349_120 Hb_001053_060 Hb_001053_060 Hb_001017_030--Hb_001053_060 Hb_001017_030--Hb_003682_070 Hb_000342_170 Hb_000342_170 Hb_001017_030--Hb_000342_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00406 1.61096 2.78766 4.60879 0.664514 0.999146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.924211 0.96955 1.7561 1.1827 5.40162

CAGE analysis