Hb_000684_430

Information

Type -
Description -
Location Contig684: 414244-422147
Sequence    

Annotation

kegg
ID rcu:RCOM_0819860
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082259.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
swissprot
ID Q8GYL7
description Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3
trembl
ID A0A067KB55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16448 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54027: 414345-417477 , PASA_asmbl_54029: 418045-418693 , PASA_asmbl_54030: 419912-421620 , PASA_asmbl_54032: 421942-422057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_430 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
2 Hb_001959_060 0.0723177696 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
3 Hb_004055_160 0.0744007651 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
4 Hb_002217_140 0.07606353 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
5 Hb_006829_080 0.0791571038 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
6 Hb_148146_010 0.0857986311 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
7 Hb_002005_040 0.0929928259 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_001723_030 0.0947275504 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
9 Hb_005116_100 0.0959759861 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
10 Hb_000802_050 0.0970174318 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
11 Hb_000537_070 0.0972587704 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
12 Hb_005618_080 0.0972627632 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
13 Hb_014361_110 0.0973806073 - - RNA binding protein, putative [Ricinus communis]
14 Hb_002928_030 0.097660912 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
15 Hb_189003_060 0.0997266601 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000473_050 0.1027193021 - - chromatin regulatory protein sir2, putative [Ricinus communis]
17 Hb_000032_390 0.1067129677 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
18 Hb_004871_010 0.1068883645 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
19 Hb_001300_130 0.1084494955 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
20 Hb_001269_500 0.1102163009 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000684_430 Hb_000684_430 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_004055_160 Hb_004055_160 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_006829_080 Hb_006829_080 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_001959_060--Hb_006829_080 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_004055_160--Hb_002005_040 Hb_009687_020 Hb_009687_020 Hb_004055_160--Hb_009687_020 Hb_004055_160--Hb_006829_080 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_001348_090 Hb_001348_090 Hb_004055_160--Hb_001348_090 Hb_001723_030 Hb_001723_030 Hb_002217_140--Hb_001723_030 Hb_002217_140--Hb_004055_160 Hb_000803_240 Hb_000803_240 Hb_002217_140--Hb_000803_240 Hb_002217_140--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002217_140--Hb_000802_050 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_000056_310 Hb_000056_310 Hb_148146_010--Hb_000056_310 Hb_148146_010--Hb_005116_100 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_002005_040--Hb_001348_090 Hb_002005_040--Hb_005116_100 Hb_002044_160 Hb_002044_160 Hb_002005_040--Hb_002044_160 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13629 2.02818 11.9689 4.3543 2.30463 1.72296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4511 1.81772 1.82714 2.1169 17.2224

CAGE analysis