Hb_000684_490

Information

Type transcription factor
Description TF Family: WRKY
Location Contig684: 453455-458296
Sequence    

Annotation

kegg
ID rcu:RCOM_0819900
description hypothetical protein
nr
ID XP_012082254.1
description PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
swissprot
ID Q9ZUU0
description WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2
trembl
ID M9TMC6
description Uncharacterized protein OS=Jatropha curcas GN=WRKY04 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54038: 453310-453538 , PASA_asmbl_54040: 454059-457982 , PASA_asmbl_54041: 453092-457982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_490 0.0 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
2 Hb_000471_010 0.0379903606 - - ATP binding protein, putative [Ricinus communis]
3 Hb_004586_110 0.0570171527 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_011861_020 0.0723027506 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
5 Hb_000005_350 0.0842286148 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
6 Hb_010334_040 0.0879939184 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
7 Hb_116469_010 0.0965735578 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
8 Hb_000589_100 0.1042158491 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_150730_010 0.1046583871 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
10 Hb_000057_180 0.1102120784 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
11 Hb_005010_040 0.1144506821 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
12 Hb_009812_010 0.1152100144 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_004128_090 0.1156043568 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
14 Hb_028927_010 0.1181934856 - - leucine-rich repeat protein, putative [Ricinus communis]
15 Hb_005116_010 0.1218142921 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
16 Hb_002003_030 0.1289025739 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
17 Hb_001660_040 0.1303327468 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
18 Hb_002475_030 0.1309697597 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009150_060 0.132110165 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
20 Hb_004010_090 0.1326962067 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_490 Hb_000684_490 Hb_000471_010 Hb_000471_010 Hb_000684_490--Hb_000471_010 Hb_004586_110 Hb_004586_110 Hb_000684_490--Hb_004586_110 Hb_011861_020 Hb_011861_020 Hb_000684_490--Hb_011861_020 Hb_000005_350 Hb_000005_350 Hb_000684_490--Hb_000005_350 Hb_010334_040 Hb_010334_040 Hb_000684_490--Hb_010334_040 Hb_116469_010 Hb_116469_010 Hb_000684_490--Hb_116469_010 Hb_000471_010--Hb_004586_110 Hb_000471_010--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000471_010--Hb_150730_010 Hb_000471_010--Hb_116469_010 Hb_000471_010--Hb_000005_350 Hb_004586_110--Hb_011861_020 Hb_009812_010 Hb_009812_010 Hb_004586_110--Hb_009812_010 Hb_009150_060 Hb_009150_060 Hb_004586_110--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_004586_110--Hb_005168_030 Hb_011861_020--Hb_150730_010 Hb_011861_020--Hb_000005_350 Hb_011861_020--Hb_116469_010 Hb_000057_180 Hb_000057_180 Hb_011861_020--Hb_000057_180 Hb_000005_350--Hb_010334_040 Hb_000589_100 Hb_000589_100 Hb_000005_350--Hb_000589_100 Hb_000005_350--Hb_116469_010 Hb_001691_060 Hb_001691_060 Hb_000005_350--Hb_001691_060 Hb_005116_010 Hb_005116_010 Hb_010334_040--Hb_005116_010 Hb_000025_740 Hb_000025_740 Hb_010334_040--Hb_000025_740 Hb_010334_040--Hb_000471_010 Hb_005010_040 Hb_005010_040 Hb_010334_040--Hb_005010_040 Hb_002003_030 Hb_002003_030 Hb_116469_010--Hb_002003_030 Hb_028927_010 Hb_028927_010 Hb_116469_010--Hb_028927_010 Hb_116469_010--Hb_150730_010 Hb_116469_010--Hb_000057_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0159931 3.65487 6.89687 3.82319 0.00989123 0.0135431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.011197 0.0264349 0.0845838 22.671 3.60506

CAGE analysis