Hb_000684_510

Information

Type -
Description -
Location Contig684: 465017-479379
Sequence    

Annotation

kegg
ID rcu:RCOM_0819920
description run and tbc1 domain containing 3, plant, putative
nr
ID XP_002525202.1
description run and tbc1 domain containing 3, plant, putative [Ricinus communis]
swissprot
ID C8VDQ4
description Putative GTPase-activating protein AN11010 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN11010 PE=3 SV=1
trembl
ID B9SGT3
description Run and tbc1 domain containing 3, plant, putative OS=Ricinus communis GN=RCOM_0819920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54044: 465675-465995 , PASA_asmbl_54045: 474483-479369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_510 0.0 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
2 Hb_003711_010 0.0619352441 - - isopropylmalate synthase, putative [Ricinus communis]
3 Hb_001723_010 0.0629498636 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
4 Hb_004517_020 0.0651481711 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
5 Hb_000402_150 0.0664789666 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
6 Hb_000373_170 0.0684869604 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
7 Hb_000085_170 0.0729244388 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
8 Hb_033312_040 0.0741276392 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
9 Hb_021165_010 0.0759431976 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
10 Hb_000661_120 0.0785959774 - - cap binding protein, putative [Ricinus communis]
11 Hb_000139_320 0.0792236753 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
12 Hb_000977_300 0.0798420982 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
13 Hb_008114_040 0.0801249331 - - Fanconi anemia group D2 [Gossypium arboreum]
14 Hb_000513_090 0.0805796276 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
15 Hb_000510_360 0.0811695235 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
16 Hb_001329_200 0.0821734619 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
17 Hb_027506_010 0.0827177511 - - PREDICTED: cullin-4 [Jatropha curcas]
18 Hb_000008_240 0.083274132 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000120_910 0.0833522435 - - plant ubiquilin, putative [Ricinus communis]
20 Hb_000107_660 0.0835817302 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_510 Hb_000684_510 Hb_003711_010 Hb_003711_010 Hb_000684_510--Hb_003711_010 Hb_001723_010 Hb_001723_010 Hb_000684_510--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000684_510--Hb_004517_020 Hb_000402_150 Hb_000402_150 Hb_000684_510--Hb_000402_150 Hb_000373_170 Hb_000373_170 Hb_000684_510--Hb_000373_170 Hb_000085_170 Hb_000085_170 Hb_000684_510--Hb_000085_170 Hb_003711_010--Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_003711_010--Hb_000340_030 Hb_003711_010--Hb_000373_170 Hb_000139_320 Hb_000139_320 Hb_003711_010--Hb_000139_320 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_001723_010--Hb_000340_030 Hb_001723_010--Hb_004517_020 Hb_001723_010--Hb_000139_320 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350 Hb_008114_040 Hb_008114_040 Hb_000402_150--Hb_008114_040 Hb_001878_050 Hb_001878_050 Hb_000402_150--Hb_001878_050 Hb_001357_310 Hb_001357_310 Hb_000402_150--Hb_001357_310 Hb_012092_050 Hb_012092_050 Hb_000402_150--Hb_012092_050 Hb_006588_060 Hb_006588_060 Hb_000402_150--Hb_006588_060 Hb_000996_020 Hb_000996_020 Hb_000373_170--Hb_000996_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_000510_360 Hb_000510_360 Hb_000085_170--Hb_000510_360 Hb_000702_090 Hb_000702_090 Hb_000085_170--Hb_000702_090 Hb_000321_140 Hb_000321_140 Hb_000085_170--Hb_000321_140 Hb_012506_030 Hb_012506_030 Hb_000085_170--Hb_012506_030 Hb_033312_040 Hb_033312_040 Hb_000085_170--Hb_033312_040 Hb_002326_110 Hb_002326_110 Hb_000085_170--Hb_002326_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89381 4.6026 4.46037 3.32084 2.28343 3.01748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.08402 1.74464 2.17976 4.39216 2.58

CAGE analysis