Hb_000685_040

Information

Type -
Description -
Location Contig685: 31629-39124
Sequence    

Annotation

kegg
ID osa:4352106
description Os12g0428300
nr
ID EEE62873.1
description hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID B9FJA0
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_17676 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000685_040 0.0 - - hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]
2 Hb_007320_020 0.0942362612 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
3 Hb_010812_140 0.1201587248 - - protein binding protein, putative [Ricinus communis]
4 Hb_001675_130 0.1522050793 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
5 Hb_010813_030 0.159214411 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
6 Hb_003767_010 0.1609726315 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
7 Hb_000649_280 0.1637531284 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
8 Hb_000377_160 0.1673183284 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
9 Hb_000059_080 0.1719633165 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
10 Hb_011174_100 0.1725064045 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_001085_230 0.173833901 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
12 Hb_031949_010 0.1768074265 - - -
13 Hb_002740_170 0.1772693674 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
14 Hb_000254_150 0.1788303429 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
15 Hb_007919_030 0.1809510172 - - -
16 Hb_001907_020 0.1863318544 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
17 Hb_000808_220 0.1886085409 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
18 Hb_000684_010 0.1899793847 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_005470_040 0.1912226497 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
20 Hb_001971_020 0.193914421 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]

Gene co-expression network

sample Hb_000685_040 Hb_000685_040 Hb_007320_020 Hb_007320_020 Hb_000685_040--Hb_007320_020 Hb_010812_140 Hb_010812_140 Hb_000685_040--Hb_010812_140 Hb_001675_130 Hb_001675_130 Hb_000685_040--Hb_001675_130 Hb_010813_030 Hb_010813_030 Hb_000685_040--Hb_010813_030 Hb_003767_010 Hb_003767_010 Hb_000685_040--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_000685_040--Hb_000649_280 Hb_001971_020 Hb_001971_020 Hb_007320_020--Hb_001971_020 Hb_000059_080 Hb_000059_080 Hb_007320_020--Hb_000059_080 Hb_007320_020--Hb_003767_010 Hb_007320_020--Hb_010812_140 Hb_000377_160 Hb_000377_160 Hb_007320_020--Hb_000377_160 Hb_012023_010 Hb_012023_010 Hb_010812_140--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_010812_140--Hb_001619_010 Hb_010812_140--Hb_003767_010 Hb_031949_010 Hb_031949_010 Hb_010812_140--Hb_031949_010 Hb_000254_150 Hb_000254_150 Hb_001675_130--Hb_000254_150 Hb_007919_030 Hb_007919_030 Hb_001675_130--Hb_007919_030 Hb_000684_010 Hb_000684_010 Hb_001675_130--Hb_000684_010 Hb_001675_130--Hb_003767_010 Hb_001675_130--Hb_000649_280 Hb_001675_130--Hb_010813_030 Hb_018212_020 Hb_018212_020 Hb_010813_030--Hb_018212_020 Hb_010813_030--Hb_000254_150 Hb_000876_050 Hb_000876_050 Hb_010813_030--Hb_000876_050 Hb_006326_030 Hb_006326_030 Hb_010813_030--Hb_006326_030 Hb_132515_010 Hb_132515_010 Hb_010813_030--Hb_132515_010 Hb_003767_010--Hb_000377_160 Hb_003767_010--Hb_000649_280 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_123560_050 Hb_123560_050 Hb_003767_010--Hb_123560_050 Hb_109489_010 Hb_109489_010 Hb_003767_010--Hb_109489_010 Hb_000649_280--Hb_000377_160 Hb_000563_120 Hb_000563_120 Hb_000649_280--Hb_000563_120 Hb_007420_010 Hb_007420_010 Hb_000649_280--Hb_007420_010 Hb_001907_020 Hb_001907_020 Hb_000649_280--Hb_001907_020 Hb_000649_280--Hb_123560_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.533431 0.0837699 0.0647724 0 0.0539073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.518239 0.384813

CAGE analysis