Hb_000689_010

Information

Type desease resistance
Description Gene Name: LRR_8
Location Contig689: 541-2133
Sequence    

Annotation

kegg
ID rcu:RCOM_0024480
description Disease resistance protein RPM1, putative
nr
ID XP_011034099.1
description PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ1
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000689_010 0.0 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
2 Hb_000046_430 0.0966728942 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
3 Hb_000990_040 0.1084893538 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
4 Hb_004611_050 0.1138720865 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
5 Hb_006970_170 0.1147403151 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_030982_050 0.1150687727 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
7 Hb_002010_100 0.1180635931 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
8 Hb_001135_010 0.125055265 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
9 Hb_002361_010 0.125865706 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
10 Hb_002301_370 0.1260087457 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
11 Hb_000189_160 0.1260578779 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
12 Hb_000230_360 0.1275187229 - - PREDICTED: BI1-like protein [Jatropha curcas]
13 Hb_007483_080 0.1283965763 - - hypothetical protein RCOM_0634810 [Ricinus communis]
14 Hb_002316_020 0.1310530416 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
15 Hb_003849_030 0.1313269312 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
16 Hb_010174_180 0.1327424718 - - protein binding protein, putative [Ricinus communis]
17 Hb_000061_310 0.1336210364 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
18 Hb_070136_010 0.1338736241 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_031385_010 0.1360748816 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
20 Hb_004117_280 0.136139728 - - hypothetical protein JCGZ_00361 [Jatropha curcas]

Gene co-expression network

sample Hb_000689_010 Hb_000689_010 Hb_000046_430 Hb_000046_430 Hb_000689_010--Hb_000046_430 Hb_000990_040 Hb_000990_040 Hb_000689_010--Hb_000990_040 Hb_004611_050 Hb_004611_050 Hb_000689_010--Hb_004611_050 Hb_006970_170 Hb_006970_170 Hb_000689_010--Hb_006970_170 Hb_030982_050 Hb_030982_050 Hb_000689_010--Hb_030982_050 Hb_002010_100 Hb_002010_100 Hb_000689_010--Hb_002010_100 Hb_000189_160 Hb_000189_160 Hb_000046_430--Hb_000189_160 Hb_003849_030 Hb_003849_030 Hb_000046_430--Hb_003849_030 Hb_003224_010 Hb_003224_010 Hb_000046_430--Hb_003224_010 Hb_000046_430--Hb_030982_050 Hb_000046_430--Hb_004611_050 Hb_005486_020 Hb_005486_020 Hb_000990_040--Hb_005486_020 Hb_093364_010 Hb_093364_010 Hb_000990_040--Hb_093364_010 Hb_000990_040--Hb_004611_050 Hb_029095_010 Hb_029095_010 Hb_000990_040--Hb_029095_010 Hb_000185_170 Hb_000185_170 Hb_000990_040--Hb_000185_170 Hb_007894_120 Hb_007894_120 Hb_000990_040--Hb_007894_120 Hb_004611_050--Hb_093364_010 Hb_004117_280 Hb_004117_280 Hb_004611_050--Hb_004117_280 Hb_004611_050--Hb_029095_010 Hb_000020_020 Hb_000020_020 Hb_004611_050--Hb_000020_020 Hb_004611_050--Hb_000185_170 Hb_002871_110 Hb_002871_110 Hb_006970_170--Hb_002871_110 Hb_000500_230 Hb_000500_230 Hb_006970_170--Hb_000500_230 Hb_006970_170--Hb_007894_120 Hb_000010_370 Hb_000010_370 Hb_006970_170--Hb_000010_370 Hb_006970_170--Hb_030982_050 Hb_006970_170--Hb_003849_030 Hb_106089_010 Hb_106089_010 Hb_030982_050--Hb_106089_010 Hb_142026_010 Hb_142026_010 Hb_030982_050--Hb_142026_010 Hb_000163_180 Hb_000163_180 Hb_030982_050--Hb_000163_180 Hb_001141_160 Hb_001141_160 Hb_030982_050--Hb_001141_160 Hb_007483_080 Hb_007483_080 Hb_002010_100--Hb_007483_080 Hb_002361_010 Hb_002361_010 Hb_002010_100--Hb_002361_010 Hb_005016_080 Hb_005016_080 Hb_002010_100--Hb_005016_080 Hb_005463_070 Hb_005463_070 Hb_002010_100--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002010_100--Hb_000318_050 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290199 15.63 31.5361 18.2115 1.61654 0.119606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291485 0.0229326 0.129545 13.8387 19.0447

CAGE analysis