Hb_000690_080

Information

Type transcription factor
Description TF Family: HB
Location Contig690: 97949-99627
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_080 0.0 transcription factor TF Family: HB -
2 Hb_004944_010 0.05902582 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
3 Hb_009767_120 0.0666411419 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
4 Hb_000977_130 0.0701323971 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
5 Hb_000107_050 0.0756924539 - - 60S ribosomal protein L9, putative [Ricinus communis]
6 Hb_141131_010 0.0771665019 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
7 Hb_003874_020 0.0772838418 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
8 Hb_001252_100 0.0824689377 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
9 Hb_148912_010 0.0831264077 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000349_060 0.0835764385 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_003746_040 0.0836963134 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
12 Hb_003038_030 0.0839137301 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
13 Hb_011828_050 0.0842079656 - - 40S ribosomal protein S23, putative [Ricinus communis]
14 Hb_011794_090 0.0850149225 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
15 Hb_043302_010 0.0860940486 - - ADP,ATP carrier protein, putative [Ricinus communis]
16 Hb_000457_110 0.0869794958 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
17 Hb_000500_130 0.0875655721 - - small GTPase [Hevea brasiliensis]
18 Hb_000200_210 0.0912134887 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001741_140 0.0917903145 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
20 Hb_000933_180 0.0930752664 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000690_080 Hb_000690_080 Hb_004944_010 Hb_004944_010 Hb_000690_080--Hb_004944_010 Hb_009767_120 Hb_009767_120 Hb_000690_080--Hb_009767_120 Hb_000977_130 Hb_000977_130 Hb_000690_080--Hb_000977_130 Hb_000107_050 Hb_000107_050 Hb_000690_080--Hb_000107_050 Hb_141131_010 Hb_141131_010 Hb_000690_080--Hb_141131_010 Hb_003874_020 Hb_003874_020 Hb_000690_080--Hb_003874_020 Hb_000349_060 Hb_000349_060 Hb_004944_010--Hb_000349_060 Hb_004944_010--Hb_141131_010 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_004944_010--Hb_003874_020 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_009767_120--Hb_003874_020 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_002997_170 Hb_002997_170 Hb_000977_130--Hb_002997_170 Hb_001741_140 Hb_001741_140 Hb_000977_130--Hb_001741_140 Hb_000977_130--Hb_009767_120 Hb_011794_090 Hb_011794_090 Hb_000977_130--Hb_011794_090 Hb_000977_130--Hb_000107_050 Hb_000107_050--Hb_000933_180 Hb_010128_130 Hb_010128_130 Hb_000107_050--Hb_010128_130 Hb_000107_050--Hb_011794_090 Hb_000107_050--Hb_001741_140 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4312 4.23395 7.12168 10.5245 18.0593 24.0591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4305 23.2991 11.4358 5.19509 2.64499

CAGE analysis