Hb_000690_130

Information

Type -
Description -
Location Contig690: 151470-168653
Sequence    

Annotation

kegg
ID rcu:RCOM_1316930
description hypothetical protein
nr
ID XP_012069335.1
description PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RZ30
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1316930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54311: 151738-157417 , PASA_asmbl_54312: 160494-161022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_130 0.0 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
2 Hb_006064_010 0.047898859 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
3 Hb_002687_130 0.0703898513 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
4 Hb_000373_240 0.0725746681 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
5 Hb_002391_300 0.0742398018 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
6 Hb_004182_040 0.0761846615 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
7 Hb_002805_270 0.0778611462 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000170_210 0.0822843801 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_003125_160 0.0853399689 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
10 Hb_000342_130 0.0858252177 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
11 Hb_007632_030 0.0862285302 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
12 Hb_002154_120 0.0865934497 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
13 Hb_000879_200 0.0867204969 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
14 Hb_003728_080 0.0886350847 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
15 Hb_000120_790 0.0894196693 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
16 Hb_000926_280 0.0898126039 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
17 Hb_000058_100 0.0898782153 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
18 Hb_000618_030 0.0911096993 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
19 Hb_001444_010 0.0932338362 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
20 Hb_000395_170 0.093289494 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]

Gene co-expression network

sample Hb_000690_130 Hb_000690_130 Hb_006064_010 Hb_006064_010 Hb_000690_130--Hb_006064_010 Hb_002687_130 Hb_002687_130 Hb_000690_130--Hb_002687_130 Hb_000373_240 Hb_000373_240 Hb_000690_130--Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000690_130--Hb_002391_300 Hb_004182_040 Hb_004182_040 Hb_000690_130--Hb_004182_040 Hb_002805_270 Hb_002805_270 Hb_000690_130--Hb_002805_270 Hb_003728_080 Hb_003728_080 Hb_006064_010--Hb_003728_080 Hb_000879_200 Hb_000879_200 Hb_006064_010--Hb_000879_200 Hb_011139_030 Hb_011139_030 Hb_006064_010--Hb_011139_030 Hb_007026_030 Hb_007026_030 Hb_006064_010--Hb_007026_030 Hb_009646_030 Hb_009646_030 Hb_006064_010--Hb_009646_030 Hb_028227_020 Hb_028227_020 Hb_002687_130--Hb_028227_020 Hb_006120_070 Hb_006120_070 Hb_002687_130--Hb_006120_070 Hb_009694_010 Hb_009694_010 Hb_002687_130--Hb_009694_010 Hb_029921_040 Hb_029921_040 Hb_002687_130--Hb_029921_040 Hb_002687_130--Hb_006064_010 Hb_000373_240--Hb_002391_300 Hb_000889_020 Hb_000889_020 Hb_000373_240--Hb_000889_020 Hb_003406_010 Hb_003406_010 Hb_000373_240--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000373_240--Hb_007218_080 Hb_001789_240 Hb_001789_240 Hb_000373_240--Hb_001789_240 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_002391_300--Hb_007218_080 Hb_003125_160 Hb_003125_160 Hb_004182_040--Hb_003125_160 Hb_003665_060 Hb_003665_060 Hb_004182_040--Hb_003665_060 Hb_004182_040--Hb_003728_080 Hb_001350_010 Hb_001350_010 Hb_004182_040--Hb_001350_010 Hb_000291_220 Hb_000291_220 Hb_004182_040--Hb_000291_220 Hb_002805_270--Hb_028227_020 Hb_002805_270--Hb_004182_040 Hb_000058_100 Hb_000058_100 Hb_002805_270--Hb_000058_100 Hb_005697_060 Hb_005697_060 Hb_002805_270--Hb_005697_060 Hb_004414_060 Hb_004414_060 Hb_002805_270--Hb_004414_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19796 1.86671 3.8715 1.95737 7.05059 7.40752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54032 5.48709 3.95939 3.4799 3.71039

CAGE analysis