Hb_000690_180

Information

Type -
Description -
Location Contig690: 260019-267429
Sequence    

Annotation

kegg
ID mdm:103446296
description 26S proteasome non-ATPase regulatory subunit 13 homolog B
nr
ID XP_012081048.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
swissprot
ID Q8RWF0
description 26S proteasome non-ATPase regulatory subunit 13 homolog A OS=Arabidopsis thaliana GN=RPN9A PE=1 SV=1
trembl
ID A0A067K2L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17091 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 13 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54316: 260087-267450 , PASA_asmbl_54317: 265710-266231 , PASA_asmbl_54318: 264355-264552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_180 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
2 Hb_004032_010 0.0660124613 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
3 Hb_001369_640 0.0685499425 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
4 Hb_002226_070 0.0723065383 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
5 Hb_005045_060 0.081425947 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
6 Hb_003929_250 0.0845091891 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
7 Hb_000056_200 0.0862229554 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
8 Hb_000656_170 0.087707373 - - lsm1, putative [Ricinus communis]
9 Hb_001226_160 0.0879001358 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
10 Hb_002874_190 0.0880054001 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
11 Hb_001314_100 0.0880491174 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
12 Hb_015279_010 0.0884189749 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
13 Hb_000085_320 0.0884413822 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
14 Hb_000380_190 0.0889675495 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
15 Hb_009265_070 0.0900993796 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
16 Hb_009051_030 0.0902084997 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
17 Hb_000058_060 0.090296773 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
18 Hb_159809_020 0.0904869187 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000926_250 0.0907024535 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
20 Hb_001123_130 0.0911847255 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000690_180 Hb_000690_180 Hb_004032_010 Hb_004032_010 Hb_000690_180--Hb_004032_010 Hb_001369_640 Hb_001369_640 Hb_000690_180--Hb_001369_640 Hb_002226_070 Hb_002226_070 Hb_000690_180--Hb_002226_070 Hb_005045_060 Hb_005045_060 Hb_000690_180--Hb_005045_060 Hb_003929_250 Hb_003929_250 Hb_000690_180--Hb_003929_250 Hb_000056_200 Hb_000056_200 Hb_000690_180--Hb_000056_200 Hb_004032_010--Hb_002226_070 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_004032_010--Hb_005045_060 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020 Hb_000152_420 Hb_000152_420 Hb_001369_640--Hb_000152_420 Hb_003943_130 Hb_003943_130 Hb_001369_640--Hb_003943_130 Hb_001314_100 Hb_001314_100 Hb_001369_640--Hb_001314_100 Hb_002289_120 Hb_002289_120 Hb_001369_640--Hb_002289_120 Hb_134949_020 Hb_134949_020 Hb_001369_640--Hb_134949_020 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_001341_090 Hb_001341_090 Hb_005045_060--Hb_001341_090 Hb_000815_320 Hb_000815_320 Hb_005045_060--Hb_000815_320 Hb_024071_020 Hb_024071_020 Hb_005045_060--Hb_024071_020 Hb_005045_060--Hb_001489_060 Hb_002811_260 Hb_002811_260 Hb_005045_060--Hb_002811_260 Hb_000340_300 Hb_000340_300 Hb_003929_250--Hb_000340_300 Hb_000920_180 Hb_000920_180 Hb_003929_250--Hb_000920_180 Hb_009557_070 Hb_009557_070 Hb_003929_250--Hb_009557_070 Hb_003929_250--Hb_000056_200 Hb_096563_010 Hb_096563_010 Hb_003929_250--Hb_096563_010 Hb_000465_460 Hb_000465_460 Hb_003929_250--Hb_000465_460 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.9165 55.5552 51.7828 69.7714 83.1742 108.706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.27 196.373 111.419 42.5833 29.2593

CAGE analysis