Hb_000690_190

Information

Type -
Description -
Location Contig690: 316711-319438
Sequence    

Annotation

kegg
ID rcu:RCOM_1198120
description 40S ribosomal protein S7, putative
nr
ID XP_002533703.1
description 40S ribosomal protein S7, putative [Ricinus communis]
swissprot
ID Q9ZNS1
description 40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1
trembl
ID B9T634
description 40S ribosomal protein S7, putative OS=Ricinus communis GN=RCOM_1198120 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54319: 316684-319459
cDNA
(Sanger)
(ID:Location)		 002_B23.ab1: 316724-319429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_190 0.0 - - 40S ribosomal protein S7, putative [Ricinus communis]
2 Hb_002946_190 0.0671750772 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
3 Hb_002307_180 0.0754102712 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
4 Hb_000599_260 0.080716703 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
5 Hb_007878_010 0.0881440915 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
6 Hb_161574_020 0.0886462402 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
7 Hb_002171_060 0.088931493 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000185_050 0.0919969562 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
9 Hb_000359_150 0.0930540716 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
10 Hb_000318_210 0.0945251019 - - PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]
11 Hb_004096_090 0.0954270761 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
12 Hb_004041_020 0.0956697043 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
13 Hb_146673_010 0.0981648756 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
14 Hb_004116_060 0.0996975896 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
15 Hb_010315_060 0.1007489524 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
16 Hb_156635_010 0.1009078781 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
17 Hb_012565_070 0.1009836651 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
18 Hb_000422_030 0.1010111584 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
19 Hb_000562_030 0.1012453197 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000649_230 0.1012925802 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000690_190 Hb_000690_190 Hb_002946_190 Hb_002946_190 Hb_000690_190--Hb_002946_190 Hb_002307_180 Hb_002307_180 Hb_000690_190--Hb_002307_180 Hb_000599_260 Hb_000599_260 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_000690_190--Hb_002171_060 Hb_004041_020 Hb_004041_020 Hb_002946_190--Hb_004041_020 Hb_001863_380 Hb_001863_380 Hb_002946_190--Hb_001863_380 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_000413_240 Hb_000413_240 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100 Hb_002307_180--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_002307_180--Hb_012565_070 Hb_000270_310 Hb_000270_310 Hb_002307_180--Hb_000270_310 Hb_000270_470 Hb_000270_470 Hb_002307_180--Hb_000270_470 Hb_032202_100 Hb_032202_100 Hb_002307_180--Hb_032202_100 Hb_001931_010 Hb_001931_010 Hb_000599_260--Hb_001931_010 Hb_000599_260--Hb_002171_060 Hb_000505_130 Hb_000505_130 Hb_000599_260--Hb_000505_130 Hb_000599_260--Hb_001472_100 Hb_000599_260--Hb_012565_070 Hb_007878_010--Hb_161574_020 Hb_002641_060 Hb_002641_060 Hb_007878_010--Hb_002641_060 Hb_007878_010--Hb_002171_060 Hb_001278_100 Hb_001278_100 Hb_007878_010--Hb_001278_100 Hb_000720_040 Hb_000720_040 Hb_007878_010--Hb_000720_040 Hb_007878_010--Hb_000270_310 Hb_161574_020--Hb_000270_310 Hb_161574_020--Hb_002171_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_161574_020--Hb_001278_100 Hb_000261_160 Hb_000261_160 Hb_002171_060--Hb_000261_160 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.7401 60.2125 197.151 128.169 97.6119 124.665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.526 226.342 72.6296 68.5198 72.642

CAGE analysis