Hb_000692_060

Information

Type -
Description -
Location Contig692: 67592-72405
Sequence    

Annotation

kegg
ID rcu:RCOM_1599390
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002510594.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q8RWL2
description Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2
trembl
ID B9R8F1
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1599390 PE=4 SV=1
Gene Ontology
ID GO:0016772
description calcium-dependent protein kinase 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54442: 71985-72303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_060 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_000188_070 0.0487668986 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_007254_010 0.0499370007 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
4 Hb_033834_020 0.0512170677 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001958_030 0.062189567 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_000236_130 0.0637901615 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
7 Hb_022167_010 0.0677506207 - - Kinase, putative isoform 2 [Theobroma cacao]
8 Hb_000928_100 0.0796664586 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_003777_090 0.0826059969 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
10 Hb_000294_020 0.0847892555 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
11 Hb_001638_190 0.0917054339 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
12 Hb_000890_170 0.0972812961 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
13 Hb_002710_040 0.0992676467 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
14 Hb_092516_010 0.1032491155 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
15 Hb_001544_060 0.1120892308 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
16 Hb_001655_080 0.1122721703 - - Purple acid phosphatase precursor, putative [Ricinus communis]
17 Hb_046590_010 0.1130953043 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
18 Hb_000386_010 0.1153865602 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000749_140 0.117460801 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
20 Hb_179129_010 0.1180634311 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]

Gene co-expression network

sample Hb_000692_060 Hb_000692_060 Hb_000188_070 Hb_000188_070 Hb_000692_060--Hb_000188_070 Hb_007254_010 Hb_007254_010 Hb_000692_060--Hb_007254_010 Hb_033834_020 Hb_033834_020 Hb_000692_060--Hb_033834_020 Hb_001958_030 Hb_001958_030 Hb_000692_060--Hb_001958_030 Hb_000236_130 Hb_000236_130 Hb_000692_060--Hb_000236_130 Hb_022167_010 Hb_022167_010 Hb_000692_060--Hb_022167_010 Hb_000188_070--Hb_033834_020 Hb_000188_070--Hb_001958_030 Hb_000188_070--Hb_007254_010 Hb_001638_190 Hb_001638_190 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_007254_010--Hb_033834_020 Hb_007254_010--Hb_000928_100 Hb_007254_010--Hb_022167_010 Hb_003777_090 Hb_003777_090 Hb_007254_010--Hb_003777_090 Hb_033834_020--Hb_022167_010 Hb_033834_020--Hb_000928_100 Hb_033834_020--Hb_001958_030 Hb_002710_040 Hb_002710_040 Hb_001958_030--Hb_002710_040 Hb_001958_030--Hb_001638_190 Hb_003387_010 Hb_003387_010 Hb_001958_030--Hb_003387_010 Hb_000236_130--Hb_022167_010 Hb_000890_170 Hb_000890_170 Hb_000236_130--Hb_000890_170 Hb_000236_130--Hb_003777_090 Hb_000294_020 Hb_000294_020 Hb_000236_130--Hb_000294_020 Hb_179129_010 Hb_179129_010 Hb_000236_130--Hb_179129_010 Hb_022167_010--Hb_000928_100 Hb_022167_010--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0323489 0.247143 0.0496805 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0116414 0.120948

CAGE analysis