Hb_000692_110

Information

Type -
Description -
Location Contig692: 104445-106282
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26620g
description POPTRDRAFT_559881; hypothetical protein
nr
ID XP_012073884.1
description PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
swissprot
ID Q8GT75
description NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2
trembl
ID B9H526
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26620g PE=4 SV=1
Gene Ontology
ID GO:0046872
description nep1-interacting 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54445: 104443-105824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_110 0.0 - - PREDICTED: NEP1-interacting protein-like 1 [Jatropha curcas]
2 Hb_000616_010 0.1025949476 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001189_100 0.1259643885 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
4 Hb_009554_030 0.1327905882 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
5 Hb_008066_080 0.1329782083 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
6 Hb_005766_010 0.1383087931 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_000594_160 0.1397129149 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_000203_080 0.139985447 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
9 Hb_003879_020 0.140045587 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
10 Hb_013848_030 0.1461112728 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
11 Hb_059000_010 0.1471810846 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
12 Hb_000398_140 0.147938385 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
13 Hb_004122_060 0.1494051707 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
14 Hb_000096_210 0.1507377816 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
15 Hb_000866_190 0.1519154059 - - transcription factor, putative [Ricinus communis]
16 Hb_083412_010 0.1563941128 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_014250_010 0.1578207811 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
18 Hb_006469_090 0.157901452 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
19 Hb_000258_210 0.1618606734 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
20 Hb_015306_010 0.1620012422 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]

Gene co-expression network

sample Hb_000692_110 Hb_000692_110 Hb_000616_010 Hb_000616_010 Hb_000692_110--Hb_000616_010 Hb_001189_100 Hb_001189_100 Hb_000692_110--Hb_001189_100 Hb_009554_030 Hb_009554_030 Hb_000692_110--Hb_009554_030 Hb_008066_080 Hb_008066_080 Hb_000692_110--Hb_008066_080 Hb_005766_010 Hb_005766_010 Hb_000692_110--Hb_005766_010 Hb_000594_160 Hb_000594_160 Hb_000692_110--Hb_000594_160 Hb_021346_020 Hb_021346_020 Hb_000616_010--Hb_021346_020 Hb_000616_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_000616_010--Hb_000866_190 Hb_014250_010 Hb_014250_010 Hb_000616_010--Hb_014250_010 Hb_005663_090 Hb_005663_090 Hb_000616_010--Hb_005663_090 Hb_000398_140 Hb_000398_140 Hb_001189_100--Hb_000398_140 Hb_004079_100 Hb_004079_100 Hb_001189_100--Hb_004079_100 Hb_073808_010 Hb_073808_010 Hb_001189_100--Hb_073808_010 Hb_019026_050 Hb_019026_050 Hb_001189_100--Hb_019026_050 Hb_001189_100--Hb_008066_080 Hb_001189_100--Hb_000594_160 Hb_004122_060 Hb_004122_060 Hb_009554_030--Hb_004122_060 Hb_059000_010 Hb_059000_010 Hb_009554_030--Hb_059000_010 Hb_000096_210 Hb_000096_210 Hb_009554_030--Hb_000096_210 Hb_009554_030--Hb_000866_190 Hb_009554_030--Hb_014250_010 Hb_015306_010 Hb_015306_010 Hb_009554_030--Hb_015306_010 Hb_001439_010 Hb_001439_010 Hb_008066_080--Hb_001439_010 Hb_003879_020 Hb_003879_020 Hb_008066_080--Hb_003879_020 Hb_006469_090 Hb_006469_090 Hb_008066_080--Hb_006469_090 Hb_003607_140 Hb_003607_140 Hb_008066_080--Hb_003607_140 Hb_005766_010--Hb_000594_160 Hb_005766_010--Hb_014250_010 Hb_005766_010--Hb_000866_190 Hb_005766_010--Hb_000096_210 Hb_000017_320 Hb_000017_320 Hb_005766_010--Hb_000017_320 Hb_005731_070 Hb_005731_070 Hb_005766_010--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_000594_160--Hb_007386_030 Hb_001040_200 Hb_001040_200 Hb_000594_160--Hb_001040_200 Hb_000594_160--Hb_005731_070 Hb_000594_160--Hb_004079_100 Hb_000594_160--Hb_000866_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.382496 0.571545 0.614794 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0933954 0.875306 0.518307

CAGE analysis