Hb_000692_160

Information

Type -
Description -
Location Contig692: 138741-154334
Sequence    

Annotation

kegg
ID tcc:TCM_034294
description Importin beta-2, putative isoform 2
nr
ID XP_007017905.1
description Transportin 1 isoform 1 [Theobroma cacao]
swissprot
ID Q8H0U4
description Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1
trembl
ID A0A061FCT0
description Transportin 1 isoform 1 OS=Theobroma cacao GN=TCM_034294 PE=4 SV=1
Gene Ontology
ID GO:0005622
description transportin 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54450: 138746-154261 , PASA_asmbl_54451: 138746-152397 , PASA_asmbl_54452: 151114-151261 , PASA_asmbl_54453: 152274-154109 , PASA_asmbl_54454: 152449-152699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_160 0.0 - - Transportin 1 isoform 1 [Theobroma cacao]
2 Hb_005081_020 0.0832743128 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
3 Hb_003906_170 0.0921561765 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_083799_010 0.0959233629 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001009_080 0.0963069335 - - conserved hypothetical protein [Ricinus communis]
6 Hb_075315_010 0.1001469068 - - ornithine aminotransferase [Camellia sinensis]
7 Hb_002272_170 0.1042176389 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
8 Hb_001269_140 0.1078756256 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
9 Hb_000001_190 0.1117776606 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
10 Hb_002686_310 0.1135411271 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
11 Hb_007426_140 0.1137284996 - - ornithine aminotransferase, putative [Ricinus communis]
12 Hb_000395_220 0.1172964875 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
13 Hb_039946_050 0.1219080218 - - catalytic, putative [Ricinus communis]
14 Hb_001497_060 0.1222454065 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
15 Hb_001780_150 0.1233501131 - - ceramidase, putative [Ricinus communis]
16 Hb_007441_280 0.1246215321 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
17 Hb_002836_100 0.1260896016 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
18 Hb_000915_240 0.1269917129 - - catalytic, putative [Ricinus communis]
19 Hb_003055_040 0.1285468073 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
20 Hb_006829_100 0.1285582327 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000692_160 Hb_000692_160 Hb_005081_020 Hb_005081_020 Hb_000692_160--Hb_005081_020 Hb_003906_170 Hb_003906_170 Hb_000692_160--Hb_003906_170 Hb_083799_010 Hb_083799_010 Hb_000692_160--Hb_083799_010 Hb_001009_080 Hb_001009_080 Hb_000692_160--Hb_001009_080 Hb_075315_010 Hb_075315_010 Hb_000692_160--Hb_075315_010 Hb_002272_170 Hb_002272_170 Hb_000692_160--Hb_002272_170 Hb_005081_020--Hb_083799_010 Hb_005081_020--Hb_075315_010 Hb_002391_210 Hb_002391_210 Hb_005081_020--Hb_002391_210 Hb_001269_140 Hb_001269_140 Hb_005081_020--Hb_001269_140 Hb_005081_020--Hb_003906_170 Hb_000159_120 Hb_000159_120 Hb_003906_170--Hb_000159_120 Hb_003906_170--Hb_083799_010 Hb_000327_250 Hb_000327_250 Hb_003906_170--Hb_000327_250 Hb_003906_170--Hb_075315_010 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_083799_010--Hb_075315_010 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_001009_080--Hb_001269_140 Hb_001232_010 Hb_001232_010 Hb_001009_080--Hb_001232_010 Hb_001009_080--Hb_003906_170 Hb_002972_020 Hb_002972_020 Hb_001009_080--Hb_002972_020 Hb_001761_130 Hb_001761_130 Hb_001009_080--Hb_001761_130 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_000251_040 Hb_000251_040 Hb_002272_170--Hb_000251_040 Hb_002272_170--Hb_000395_220 Hb_033772_070 Hb_033772_070 Hb_002272_170--Hb_033772_070 Hb_002272_170--Hb_007426_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.21751 4.57453 3.30832 7.4072 4.04836 5.18416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61093 1.78475 3.12069 12.6693 2.62919

CAGE analysis