Hb_000692_220

Information

Type -
Description -
Location Contig692: 179197-186458
Sequence    

Annotation

kegg
ID tcc:TCM_034304
description Major facilitator superfamily protein isoform 1
nr
ID KJB14354.1
description hypothetical protein B456_002G120900 [Gossypium raimondii]
swissprot
ID Q96MC6
description Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2
trembl
ID A0A0D2Q4V2
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G120900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54460: 181535-182775 , PASA_asmbl_54461: 183849-186399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_220 0.0 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
2 Hb_001205_150 0.0467336431 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
3 Hb_000479_190 0.0719214058 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010174_020 0.0732864611 - - protein binding protein, putative [Ricinus communis]
5 Hb_092337_010 0.0758650227 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
6 Hb_002375_070 0.0780501822 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003125_010 0.0794598316 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
8 Hb_003502_090 0.0841458283 - - ATP synthase subunit d, putative [Ricinus communis]
9 Hb_004705_100 0.0854146215 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
10 Hb_012799_160 0.086786836 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
11 Hb_007009_010 0.0888945059 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
12 Hb_001114_130 0.0904550014 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
13 Hb_000161_060 0.0905337276 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
14 Hb_003092_030 0.0905474277 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
15 Hb_001700_030 0.0907961529 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
16 Hb_000107_310 0.0912326748 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
17 Hb_003671_020 0.0920909291 - - calcineurin B, putative [Ricinus communis]
18 Hb_000976_410 0.0930423594 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_000985_060 0.0934769334 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
20 Hb_000477_060 0.0938036684 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000692_220 Hb_000692_220 Hb_001205_150 Hb_001205_150 Hb_000692_220--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_000692_220--Hb_000479_190 Hb_010174_020 Hb_010174_020 Hb_000692_220--Hb_010174_020 Hb_092337_010 Hb_092337_010 Hb_000692_220--Hb_092337_010 Hb_002375_070 Hb_002375_070 Hb_000692_220--Hb_002375_070 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_001205_150--Hb_010174_020 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_010174_020--Hb_000479_190 Hb_003671_020 Hb_003671_020 Hb_010174_020--Hb_003671_020 Hb_008300_010 Hb_008300_010 Hb_010174_020--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_010174_020--Hb_001461_010 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_001936_010 Hb_001936_010 Hb_092337_010--Hb_001936_010 Hb_092337_010--Hb_003108_020 Hb_004705_100 Hb_004705_100 Hb_092337_010--Hb_004705_100 Hb_000125_100 Hb_000125_100 Hb_092337_010--Hb_000125_100 Hb_004108_070 Hb_004108_070 Hb_002375_070--Hb_004108_070 Hb_002375_070--Hb_003671_020 Hb_011344_210 Hb_011344_210 Hb_002375_070--Hb_011344_210 Hb_000331_200 Hb_000331_200 Hb_002375_070--Hb_000331_200 Hb_002375_070--Hb_092337_010 Hb_001369_690 Hb_001369_690 Hb_003125_010--Hb_001369_690 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_012799_160 Hb_012799_160 Hb_003125_010--Hb_012799_160 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_025240_040 Hb_025240_040 Hb_003125_010--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6478 6.84887 6.06078 19.9035 11.449 17.6748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9303 21.3196 24.0794 7.30105 9.08734

CAGE analysis