Hb_000692_230

Information

Type -
Description -
Location Contig692: 188652-194218
Sequence    

Annotation

kegg
ID rcu:RCOM_1599570
description phospholipase d delta, putative (EC:3.1.4.4)
nr
ID XP_002510602.1
description phospholipase d delta, putative [Ricinus communis]
swissprot
ID Q9C5Y0
description Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2
trembl
ID B9R8F9
description Phospholipase D OS=Ricinus communis GN=RCOM_1599570 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phospholipase d delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_230 0.0 - - phospholipase d delta, putative [Ricinus communis]
2 Hb_004282_040 0.1328276767 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
3 Hb_000638_180 0.1381611381 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
4 Hb_009476_160 0.1401198709 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
5 Hb_002324_040 0.1484460043 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
6 Hb_103149_010 0.1522380638 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
7 Hb_002973_030 0.152805083 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_004032_250 0.1535376258 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000733_090 0.154367518 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
10 Hb_001016_040 0.1555201699 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
11 Hb_000497_170 0.155958269 - - PREDICTED: uncharacterized protein LOC105647275 [Jatropha curcas]
12 Hb_064047_010 0.1566260646 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008406_030 0.1569601637 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
14 Hb_005695_020 0.1572145825 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
15 Hb_000210_160 0.1576574123 - - PREDICTED: protein YLS9-like [Jatropha curcas]
16 Hb_000816_050 0.1625721668 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_004586_230 0.1662935389 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000016_150 0.1664182812 - - PREDICTED: uncharacterized protein LOC105137629 [Populus euphratica]
19 Hb_002004_010 0.1670278938 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
20 Hb_000732_100 0.1686235703 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]

Gene co-expression network

sample Hb_000692_230 Hb_000692_230 Hb_004282_040 Hb_004282_040 Hb_000692_230--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_000692_230--Hb_000638_180 Hb_009476_160 Hb_009476_160 Hb_000692_230--Hb_009476_160 Hb_002324_040 Hb_002324_040 Hb_000692_230--Hb_002324_040 Hb_103149_010 Hb_103149_010 Hb_000692_230--Hb_103149_010 Hb_002973_030 Hb_002973_030 Hb_000692_230--Hb_002973_030 Hb_000116_290 Hb_000116_290 Hb_004282_040--Hb_000116_290 Hb_002849_110 Hb_002849_110 Hb_004282_040--Hb_002849_110 Hb_000742_260 Hb_000742_260 Hb_004282_040--Hb_000742_260 Hb_004282_040--Hb_009476_160 Hb_000976_340 Hb_000976_340 Hb_004282_040--Hb_000976_340 Hb_000732_100 Hb_000732_100 Hb_000638_180--Hb_000732_100 Hb_114733_010 Hb_114733_010 Hb_000638_180--Hb_114733_010 Hb_007292_050 Hb_007292_050 Hb_000638_180--Hb_007292_050 Hb_004241_200 Hb_004241_200 Hb_000638_180--Hb_004241_200 Hb_097634_010 Hb_097634_010 Hb_000638_180--Hb_097634_010 Hb_000638_180--Hb_000742_260 Hb_009476_160--Hb_000638_180 Hb_004586_230 Hb_004586_230 Hb_009476_160--Hb_004586_230 Hb_002004_010 Hb_002004_010 Hb_009476_160--Hb_002004_010 Hb_001016_040 Hb_001016_040 Hb_009476_160--Hb_001016_040 Hb_003025_150 Hb_003025_150 Hb_002324_040--Hb_003025_150 Hb_012727_010 Hb_012727_010 Hb_002324_040--Hb_012727_010 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_000604_050 Hb_000604_050 Hb_103149_010--Hb_000604_050 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_000702_040 Hb_000702_040 Hb_103149_010--Hb_000702_040 Hb_103149_010--Hb_004586_230 Hb_103149_010--Hb_001016_040 Hb_003939_090 Hb_003939_090 Hb_103149_010--Hb_003939_090 Hb_002973_030--Hb_002004_010 Hb_002066_010 Hb_002066_010 Hb_002973_030--Hb_002066_010 Hb_000479_060 Hb_000479_060 Hb_002973_030--Hb_000479_060 Hb_000753_120 Hb_000753_120 Hb_002973_030--Hb_000753_120 Hb_000270_750 Hb_000270_750 Hb_002973_030--Hb_000270_750 Hb_013405_100 Hb_013405_100 Hb_002973_030--Hb_013405_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0149247 0.510482 0.117545 0.612773 0.0149402 0.00699389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0338662 0.0133246 0.0254219 0.126954 0.141738

CAGE analysis