Hb_000692_270

Information

Type -
Description -
Location Contig692: 217198-218442
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26760g
description POPTRDRAFT_1079795; hypothetical protein
nr
ID XP_012073883.1
description PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
swissprot
ID P50134
description Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1
trembl
ID G4XUJ8
description Ornithine decarboxylase OS=Erythroxylum coca GN=ODC PE=2 SV=1
Gene Ontology
ID GO:0004586
description ornithine decarboxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54463: 217866-218059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_270 0.0 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
2 Hb_002944_020 0.0557708737 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
3 Hb_038238_010 0.0597141453 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
4 Hb_004267_050 0.0605784703 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
5 Hb_010358_010 0.064317731 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_106528_020 0.0682695437 - - Cationic peroxidase 2 precursor [Theobroma cacao]
7 Hb_005726_030 0.0711851053 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
8 Hb_061590_010 0.0714772342 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
9 Hb_007437_010 0.072072952 - - Polygalacturonase precursor, putative [Ricinus communis]
10 Hb_187247_010 0.0755275848 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
11 Hb_006415_020 0.075532636 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
12 Hb_153208_010 0.0781384701 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
13 Hb_007337_010 0.0806762079 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
14 Hb_004190_030 0.0807292959 - - unnamed protein product [Vitis vinifera]
15 Hb_143766_040 0.0814140974 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
16 Hb_005433_050 0.0814217834 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
17 Hb_004981_020 0.0829526478 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
18 Hb_001140_330 0.0843294846 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
19 Hb_109163_010 0.0869654052 - - polyphenol oxidase [Hevea brasiliensis]
20 Hb_000563_060 0.088102882 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]

Gene co-expression network

sample Hb_000692_270 Hb_000692_270 Hb_002944_020 Hb_002944_020 Hb_000692_270--Hb_002944_020 Hb_038238_010 Hb_038238_010 Hb_000692_270--Hb_038238_010 Hb_004267_050 Hb_004267_050 Hb_000692_270--Hb_004267_050 Hb_010358_010 Hb_010358_010 Hb_000692_270--Hb_010358_010 Hb_106528_020 Hb_106528_020 Hb_000692_270--Hb_106528_020 Hb_005726_030 Hb_005726_030 Hb_000692_270--Hb_005726_030 Hb_002944_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_002944_020--Hb_153208_010 Hb_002944_020--Hb_106528_020 Hb_003188_020 Hb_003188_020 Hb_002944_020--Hb_003188_020 Hb_014034_020 Hb_014034_020 Hb_002944_020--Hb_014034_020 Hb_038238_010--Hb_106528_020 Hb_007437_010 Hb_007437_010 Hb_038238_010--Hb_007437_010 Hb_038238_010--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_038238_010--Hb_061590_010 Hb_006415_020 Hb_006415_020 Hb_038238_010--Hb_006415_020 Hb_187247_010 Hb_187247_010 Hb_038238_010--Hb_187247_010 Hb_004190_030 Hb_004190_030 Hb_004267_050--Hb_004190_030 Hb_001140_330 Hb_001140_330 Hb_004267_050--Hb_001140_330 Hb_003119_110 Hb_003119_110 Hb_004267_050--Hb_003119_110 Hb_000563_060 Hb_000563_060 Hb_004267_050--Hb_000563_060 Hb_004267_050--Hb_002944_020 Hb_004267_050--Hb_010358_010 Hb_010358_010--Hb_153208_010 Hb_010358_010--Hb_106528_020 Hb_020141_020 Hb_020141_020 Hb_010358_010--Hb_020141_020 Hb_010358_010--Hb_038238_010 Hb_010358_010--Hb_004190_030 Hb_106528_020--Hb_005726_030 Hb_106528_020--Hb_061590_010 Hb_106528_020--Hb_187247_010 Hb_106528_020--Hb_153208_010 Hb_005726_030--Hb_061590_010 Hb_005726_030--Hb_187247_010 Hb_007337_010 Hb_007337_010 Hb_005726_030--Hb_007337_010 Hb_143766_040 Hb_143766_040 Hb_005726_030--Hb_143766_040 Hb_004981_020 Hb_004981_020 Hb_005726_030--Hb_004981_020 Hb_005726_030--Hb_007437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0932968 0 0.0139485 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0388283 0 0 5.34334 0

CAGE analysis