Hb_000694_040

Information

Type -
Description -
Location Contig694: 67115-72297
Sequence    

Annotation

kegg
ID tcc:TCM_002165
description Uncharacterized protein isoform 1
nr
ID XP_007049168.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DKV6
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_002165 PE=4 SV=1
Gene Ontology
ID GO:0031023
description haus augmin-like complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54532: 67061-68064 , PASA_asmbl_54533: 71236-71801 , PASA_asmbl_54534: 72120-72323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000694_040 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_004934_030 0.0779689781 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
3 Hb_000000_360 0.0871975165 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
4 Hb_007477_070 0.0933275497 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
5 Hb_002374_170 0.0953918715 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
6 Hb_000000_210 0.0997833337 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
7 Hb_004787_060 0.101154814 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
8 Hb_002811_260 0.102477489 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
9 Hb_004453_170 0.1026529304 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
10 Hb_000025_230 0.1028617249 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
11 Hb_003849_130 0.1032667932 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
12 Hb_001195_480 0.1070260639 - - cop9 complex subunit, putative [Ricinus communis]
13 Hb_001459_080 0.107926245 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
14 Hb_140833_010 0.1084767212 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
15 Hb_005773_060 0.1091981509 - - defender against cell death, putative [Ricinus communis]
16 Hb_003607_150 0.109237358 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
17 Hb_000286_070 0.1095035733 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
18 Hb_001534_120 0.1115666532 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
19 Hb_001143_220 0.111688652 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
20 Hb_001934_030 0.1120914639 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000694_040 Hb_000694_040 Hb_004934_030 Hb_004934_030 Hb_000694_040--Hb_004934_030 Hb_000000_360 Hb_000000_360 Hb_000694_040--Hb_000000_360 Hb_007477_070 Hb_007477_070 Hb_000694_040--Hb_007477_070 Hb_002374_170 Hb_002374_170 Hb_000694_040--Hb_002374_170 Hb_000000_210 Hb_000000_210 Hb_000694_040--Hb_000000_210 Hb_004787_060 Hb_004787_060 Hb_000694_040--Hb_004787_060 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_004934_030--Hb_000000_210 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_140833_010 Hb_140833_010 Hb_000000_360--Hb_140833_010 Hb_001579_230 Hb_001579_230 Hb_000000_360--Hb_001579_230 Hb_005588_030 Hb_005588_030 Hb_000000_360--Hb_005588_030 Hb_010315_060 Hb_010315_060 Hb_000000_360--Hb_010315_060 Hb_002820_110 Hb_002820_110 Hb_000000_360--Hb_002820_110 Hb_001534_120 Hb_001534_120 Hb_007477_070--Hb_001534_120 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_001512_060 Hb_001512_060 Hb_007477_070--Hb_001512_060 Hb_001662_070 Hb_001662_070 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040 Hb_011381_060 Hb_011381_060 Hb_002374_170--Hb_011381_060 Hb_001459_080 Hb_001459_080 Hb_002374_170--Hb_001459_080 Hb_002374_170--Hb_004787_060 Hb_168878_010 Hb_168878_010 Hb_002374_170--Hb_168878_010 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_028841_030 Hb_028841_030 Hb_002374_170--Hb_028841_030 Hb_180424_010 Hb_180424_010 Hb_000000_210--Hb_180424_010 Hb_048476_110 Hb_048476_110 Hb_000000_210--Hb_048476_110 Hb_011519_010 Hb_011519_010 Hb_000000_210--Hb_011519_010 Hb_000853_430 Hb_000853_430 Hb_000000_210--Hb_000853_430 Hb_004678_040 Hb_004678_040 Hb_000000_210--Hb_004678_040 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9201 6.93659 27.9829 9.67617 17.1717 13.2966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7907 28.7349 14.7403 8.5353 3.34757

CAGE analysis