Hb_000694_050

Information

Type -
Description -
Location Contig694: 96289-103108
Sequence    

Annotation

kegg
ID rcu:RCOM_1062940
description Nuclease PA3, putative (EC:3.1.30.1)
nr
ID XP_002521425.1
description Nuclease PA3, putative [Ricinus communis]
swissprot
ID F4JJL0
description Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
trembl
ID B9S606
description Nuclease PA3, putative OS=Ricinus communis GN=RCOM_1062940 PE=4 SV=1
Gene Ontology
ID GO:0003676
description endonuclease 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54535: 96367-101529 , PASA_asmbl_54536: 96385-101529 , PASA_asmbl_54537: 101585-102162
cDNA
(Sanger)
(ID:Location)		 020_G09.ab1: 96370-98822

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000694_050 0.0 - - Nuclease PA3, putative [Ricinus communis]
2 Hb_001579_060 0.0702800483 - - carbonic anhydrase, putative [Ricinus communis]
3 Hb_001883_010 0.0830019249 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
4 Hb_000987_020 0.0849779486 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
5 Hb_002871_110 0.0990275516 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
6 Hb_002601_140 0.0996247773 - - signal transducer, putative [Ricinus communis]
7 Hb_002078_320 0.1040583193 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
8 Hb_002635_020 0.1056102525 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
9 Hb_032695_010 0.1107548585 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
10 Hb_000901_010 0.1118703853 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
11 Hb_003849_030 0.1126564233 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
12 Hb_070136_010 0.1147086962 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
13 Hb_006827_030 0.1158631499 - - oligopeptide transporter, putative [Ricinus communis]
14 Hb_000062_050 0.1159025398 - - protein binding protein, putative [Ricinus communis]
15 Hb_006970_170 0.1159476021 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_000010_370 0.1166946516 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
17 Hb_010174_180 0.1175260706 - - protein binding protein, putative [Ricinus communis]
18 Hb_000046_430 0.1184621372 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
19 Hb_000185_170 0.1186186485 - - ATP binding protein, putative [Ricinus communis]
20 Hb_002571_080 0.1197388167 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_000694_050 Hb_000694_050 Hb_001579_060 Hb_001579_060 Hb_000694_050--Hb_001579_060 Hb_001883_010 Hb_001883_010 Hb_000694_050--Hb_001883_010 Hb_000987_020 Hb_000987_020 Hb_000694_050--Hb_000987_020 Hb_002871_110 Hb_002871_110 Hb_000694_050--Hb_002871_110 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000694_050--Hb_002078_320 Hb_006827_030 Hb_006827_030 Hb_001579_060--Hb_006827_030 Hb_001579_060--Hb_000987_020 Hb_001579_060--Hb_001883_010 Hb_000680_130 Hb_000680_130 Hb_001579_060--Hb_000680_130 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010 Hb_032695_010 Hb_032695_010 Hb_001883_010--Hb_032695_010 Hb_001883_010--Hb_000680_130 Hb_000025_590 Hb_000025_590 Hb_001883_010--Hb_000025_590 Hb_001883_010--Hb_006827_030 Hb_000987_020--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_000987_020--Hb_000901_010 Hb_000185_170 Hb_000185_170 Hb_000987_020--Hb_000185_170 Hb_000037_200 Hb_000037_200 Hb_000987_020--Hb_000037_200 Hb_006970_170 Hb_006970_170 Hb_002871_110--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_002871_110--Hb_000010_370 Hb_000500_230 Hb_000500_230 Hb_002871_110--Hb_000500_230 Hb_002871_110--Hb_000025_590 Hb_007894_120 Hb_007894_120 Hb_002871_110--Hb_007894_120 Hb_002635_020 Hb_002635_020 Hb_002601_140--Hb_002635_020 Hb_000260_750 Hb_000260_750 Hb_002601_140--Hb_000260_750 Hb_002601_140--Hb_002078_320 Hb_002601_140--Hb_000987_020 Hb_002601_140--Hb_000901_010 Hb_003506_010 Hb_003506_010 Hb_002078_320--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_002078_320--Hb_004162_320 Hb_002078_320--Hb_000901_010 Hb_002078_320--Hb_000185_170 Hb_020805_070 Hb_020805_070 Hb_002078_320--Hb_020805_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0259199 6.22251 11.8904 6.84998 0.0372283 0.227121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.132254 0.127201 0.11058 6.04542 14.1094

CAGE analysis