Hb_000696_010

Information

Type -
Description -
Location Contig696: 2287-4388
Sequence    

Annotation

kegg
ID rcu:RCOM_0782600
description RING-H2 finger protein ATL4M, putative
nr
ID XP_002530631.1
description RING-H2 finger protein ATL4M, putative [Ricinus communis]
swissprot
ID Q8GT75
description NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2
trembl
ID B9SXB2
description RING-H2 finger protein ATL4M, putative OS=Ricinus communis GN=RCOM_0782600 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nep1-interacting protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54565: 3865-4369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_010 0.0 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
2 Hb_001191_110 0.069966427 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
3 Hb_003671_010 0.0710408812 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
4 Hb_000146_040 0.0872253604 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
5 Hb_002375_040 0.0890186441 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
6 Hb_005797_010 0.0910777716 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
7 Hb_033286_010 0.0959114463 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
8 Hb_001227_130 0.0969822942 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
9 Hb_000107_080 0.0994891866 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
10 Hb_001500_110 0.0996509114 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_004102_170 0.0996968128 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
12 Hb_012322_020 0.101619504 - - -
13 Hb_000260_330 0.1016834175 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
14 Hb_000035_200 0.102886103 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
15 Hb_003528_030 0.1030896186 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
16 Hb_086639_080 0.104390929 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009049_020 0.1055364282 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
18 Hb_000163_090 0.105615315 - - gamma-tubulin complex component, putative [Ricinus communis]
19 Hb_000022_050 0.1061497932 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
20 Hb_000103_310 0.1061958659 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]

Gene co-expression network

sample Hb_000696_010 Hb_000696_010 Hb_001191_110 Hb_001191_110 Hb_000696_010--Hb_001191_110 Hb_003671_010 Hb_003671_010 Hb_000696_010--Hb_003671_010 Hb_000146_040 Hb_000146_040 Hb_000696_010--Hb_000146_040 Hb_002375_040 Hb_002375_040 Hb_000696_010--Hb_002375_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_033286_010 Hb_033286_010 Hb_000696_010--Hb_033286_010 Hb_001191_110--Hb_003671_010 Hb_001191_110--Hb_002375_040 Hb_000107_080 Hb_000107_080 Hb_001191_110--Hb_000107_080 Hb_001191_110--Hb_000146_040 Hb_000594_050 Hb_000594_050 Hb_001191_110--Hb_000594_050 Hb_003671_010--Hb_033286_010 Hb_003683_020 Hb_003683_020 Hb_003671_010--Hb_003683_020 Hb_002785_050 Hb_002785_050 Hb_003671_010--Hb_002785_050 Hb_000260_330 Hb_000260_330 Hb_003671_010--Hb_000260_330 Hb_001882_050 Hb_001882_050 Hb_003671_010--Hb_001882_050 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000477_100 Hb_000477_100 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_000146_040--Hb_005797_010 Hb_002375_040--Hb_003671_010 Hb_001205_250 Hb_001205_250 Hb_002375_040--Hb_001205_250 Hb_003964_070 Hb_003964_070 Hb_002375_040--Hb_003964_070 Hb_002375_040--Hb_000594_050 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_005797_010--Hb_004102_170 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_000009_400 Hb_000009_400 Hb_005797_010--Hb_000009_400 Hb_001009_320 Hb_001009_320 Hb_033286_010--Hb_001009_320 Hb_005946_210 Hb_005946_210 Hb_033286_010--Hb_005946_210 Hb_000522_170 Hb_000522_170 Hb_033286_010--Hb_000522_170 Hb_000006_010 Hb_000006_010 Hb_033286_010--Hb_000006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.43141 7.06898 11.6125 24.4415 13.3995 17.7176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.91693 8.84117 6.89964 13.2642 7.07484

CAGE analysis