Hb_000696_030

Information

Type -
Description -
Location Contig696: 10649-13727
Sequence    

Annotation

kegg
ID rcu:RCOM_0782580
description hypothetical protein
nr
ID XP_012088462.1
description PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SXB0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0782580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54568: 11521-11897 , PASA_asmbl_54570: 13445-13768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_030 0.0 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
2 Hb_001157_190 0.0725776367 - - PREDICTED: protein YLS3 [Jatropha curcas]
3 Hb_001776_070 0.0944920491 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
4 Hb_005679_110 0.0976314167 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
5 Hb_005839_030 0.1064776731 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
6 Hb_001195_740 0.1128195041 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
7 Hb_005144_080 0.1179189347 - - Serine carboxypeptidase, putative [Ricinus communis]
8 Hb_005766_010 0.1310161879 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_001349_020 0.1312290783 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
10 Hb_027556_060 0.1338029648 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
11 Hb_004525_110 0.1356097704 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
12 Hb_001252_070 0.1367149642 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
13 Hb_010164_020 0.1371889701 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
14 Hb_005731_070 0.1382607069 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001638_150 0.1398056379 - - acyltransferase, putative [Ricinus communis]
16 Hb_011129_020 0.1400269754 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
17 Hb_000594_160 0.1407648018 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
18 Hb_000696_250 0.1415972671 - - PREDICTED: patellin-6 [Jatropha curcas]
19 Hb_003875_040 0.1437788801 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
20 Hb_001345_020 0.1489852995 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]

Gene co-expression network

sample Hb_000696_030 Hb_000696_030 Hb_001157_190 Hb_001157_190 Hb_000696_030--Hb_001157_190 Hb_001776_070 Hb_001776_070 Hb_000696_030--Hb_001776_070 Hb_005679_110 Hb_005679_110 Hb_000696_030--Hb_005679_110 Hb_005839_030 Hb_005839_030 Hb_000696_030--Hb_005839_030 Hb_001195_740 Hb_001195_740 Hb_000696_030--Hb_001195_740 Hb_005144_080 Hb_005144_080 Hb_000696_030--Hb_005144_080 Hb_001157_190--Hb_001195_740 Hb_002918_120 Hb_002918_120 Hb_001157_190--Hb_002918_120 Hb_001597_030 Hb_001597_030 Hb_001157_190--Hb_001597_030 Hb_005731_070 Hb_005731_070 Hb_001157_190--Hb_005731_070 Hb_001157_190--Hb_005839_030 Hb_010164_020 Hb_010164_020 Hb_001776_070--Hb_010164_020 Hb_027556_060 Hb_027556_060 Hb_001776_070--Hb_027556_060 Hb_001776_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_001776_070--Hb_001349_020 Hb_001776_070--Hb_005144_080 Hb_002871_050 Hb_002871_050 Hb_005679_110--Hb_002871_050 Hb_005679_110--Hb_001349_020 Hb_000482_070 Hb_000482_070 Hb_005679_110--Hb_000482_070 Hb_001345_020 Hb_001345_020 Hb_005679_110--Hb_001345_020 Hb_002592_050 Hb_002592_050 Hb_005839_030--Hb_002592_050 Hb_005839_030--Hb_005144_080 Hb_011129_020 Hb_011129_020 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100 Hb_008143_060 Hb_008143_060 Hb_001195_740--Hb_008143_060 Hb_001195_740--Hb_002918_120 Hb_001832_140 Hb_001832_140 Hb_001195_740--Hb_001832_140 Hb_000696_250 Hb_000696_250 Hb_001195_740--Hb_000696_250 Hb_002025_380 Hb_002025_380 Hb_005144_080--Hb_002025_380 Hb_006277_030 Hb_006277_030 Hb_005144_080--Hb_006277_030 Hb_004282_010 Hb_004282_010 Hb_005144_080--Hb_004282_010 Hb_005144_080--Hb_005731_070 Hb_005144_080--Hb_011129_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118825 0.717326 2.02067 2.17901 0.0325367 0.015565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0193949 0 0 2.11642 0.517973

CAGE analysis