Hb_000696_040

Information

Type -
Description -
Location Contig696: 16128-20407
Sequence    

Annotation

kegg
ID rcu:RCOM_0782470
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002530628.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q5Z8P0
description Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1
trembl
ID B9SXA9
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0782470 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54571: 16199-20294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_040 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_001699_130 0.0666787204 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
3 Hb_004607_030 0.0741388173 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
4 Hb_016901_010 0.0757184799 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
5 Hb_000617_150 0.0786526642 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
6 Hb_000062_220 0.0791156975 - - BnaC02g35870D [Brassica napus]
7 Hb_002631_060 0.0828073198 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
8 Hb_007416_320 0.0846641116 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000367_060 0.0853902906 - - diacylglycerol kinase, theta, putative [Ricinus communis]
10 Hb_010422_060 0.0876743789 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_001959_190 0.0893331988 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
12 Hb_000120_680 0.089715504 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
13 Hb_000510_320 0.0906992824 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
14 Hb_004907_110 0.0907856806 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
15 Hb_086639_030 0.0916155956 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_001454_190 0.0924999702 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
17 Hb_000086_400 0.0928169484 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_000175_060 0.093002665 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
19 Hb_002056_060 0.0936048245 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
20 Hb_004993_050 0.0949087932 - - -

Gene co-expression network

sample Hb_000696_040 Hb_000696_040 Hb_001699_130 Hb_001699_130 Hb_000696_040--Hb_001699_130 Hb_004607_030 Hb_004607_030 Hb_000696_040--Hb_004607_030 Hb_016901_010 Hb_016901_010 Hb_000696_040--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_002631_060 Hb_002631_060 Hb_000696_040--Hb_002631_060 Hb_001699_130--Hb_000617_150 Hb_000120_680 Hb_000120_680 Hb_001699_130--Hb_000120_680 Hb_000723_080 Hb_000723_080 Hb_001699_130--Hb_000723_080 Hb_010608_050 Hb_010608_050 Hb_001699_130--Hb_010608_050 Hb_001699_130--Hb_016901_010 Hb_001959_190 Hb_001959_190 Hb_004607_030--Hb_001959_190 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_004607_030--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_004607_030--Hb_008695_100 Hb_025557_030 Hb_025557_030 Hb_004607_030--Hb_025557_030 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_000617_150--Hb_000120_680 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_000617_150--Hb_011534_030 Hb_000617_150--Hb_001454_190 Hb_000617_150--Hb_008695_100 Hb_005779_060 Hb_005779_060 Hb_000062_220--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_000062_220--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_000062_220--Hb_007416_320 Hb_012019_010 Hb_012019_010 Hb_000062_220--Hb_012019_010 Hb_010422_060 Hb_010422_060 Hb_000062_220--Hb_010422_060 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260 Hb_010883_090 Hb_010883_090 Hb_002631_060--Hb_010883_090 Hb_004907_110 Hb_004907_110 Hb_002631_060--Hb_004907_110 Hb_003376_350 Hb_003376_350 Hb_002631_060--Hb_003376_350 Hb_002631_060--Hb_007416_320 Hb_000260_270 Hb_000260_270 Hb_002631_060--Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_002631_060--Hb_000395_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.2247 45.9813 21.7464 39.9258 54.5798 48.6151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.8078 97.3678 125.932 48.1557 23.1465

CAGE analysis