Hb_000696_050

Information

Type -
Description -
Location Contig696: 22974-25433
Sequence    

Annotation

kegg
ID rcu:RCOM_0311080
description hypothetical protein
nr
ID XP_012088468.1
description PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
swissprot
ID Q9SZT4
description CSC1-like protein At4g35870 OS=Arabidopsis thaliana GN=GFS10 PE=2 SV=1
trembl
ID A0A067JJ12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25349 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein at4g35870

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54573: 23089-24134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_050 0.0 - - PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
2 Hb_012395_140 0.0718707436 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
3 Hb_000094_310 0.0722272178 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
4 Hb_004182_050 0.0724446377 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
5 Hb_000723_220 0.0734197132 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
6 Hb_001550_060 0.0754573914 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
7 Hb_000213_010 0.0767026108 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
8 Hb_002311_100 0.0784770594 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
9 Hb_000107_490 0.0796708308 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
10 Hb_003253_040 0.0810314862 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
11 Hb_007810_110 0.0814197734 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
12 Hb_000174_270 0.0819787109 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
13 Hb_123903_010 0.0837640367 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
14 Hb_009615_170 0.0840706436 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
15 Hb_000230_260 0.0841289116 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
16 Hb_000412_010 0.0843251711 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000453_250 0.0843615909 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
18 Hb_003494_020 0.0846058778 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
19 Hb_012022_090 0.0849196871 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
20 Hb_021297_050 0.0852867524 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_000696_050 Hb_000696_050 Hb_012395_140 Hb_012395_140 Hb_000696_050--Hb_012395_140 Hb_000094_310 Hb_000094_310 Hb_000696_050--Hb_000094_310 Hb_004182_050 Hb_004182_050 Hb_000696_050--Hb_004182_050 Hb_000723_220 Hb_000723_220 Hb_000696_050--Hb_000723_220 Hb_001550_060 Hb_001550_060 Hb_000696_050--Hb_001550_060 Hb_000213_010 Hb_000213_010 Hb_000696_050--Hb_000213_010 Hb_000395_070 Hb_000395_070 Hb_012395_140--Hb_000395_070 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_000037_220 Hb_000037_220 Hb_000094_310--Hb_000037_220 Hb_003078_020 Hb_003078_020 Hb_000094_310--Hb_003078_020 Hb_003729_030 Hb_003729_030 Hb_000094_310--Hb_003729_030 Hb_002311_100 Hb_002311_100 Hb_000094_310--Hb_002311_100 Hb_009615_170 Hb_009615_170 Hb_000094_310--Hb_009615_170 Hb_012760_100 Hb_012760_100 Hb_004182_050--Hb_012760_100 Hb_004182_050--Hb_001814_030 Hb_004182_050--Hb_012395_140 Hb_004182_050--Hb_001550_060 Hb_000174_270 Hb_000174_270 Hb_004182_050--Hb_000174_270 Hb_000412_010 Hb_000412_010 Hb_004182_050--Hb_000412_010 Hb_000230_260 Hb_000230_260 Hb_000723_220--Hb_000230_260 Hb_006637_020 Hb_006637_020 Hb_000723_220--Hb_006637_020 Hb_017358_040 Hb_017358_040 Hb_000723_220--Hb_017358_040 Hb_001195_470 Hb_001195_470 Hb_000723_220--Hb_001195_470 Hb_085781_020 Hb_085781_020 Hb_000723_220--Hb_085781_020 Hb_071130_010 Hb_071130_010 Hb_000723_220--Hb_071130_010 Hb_006420_040 Hb_006420_040 Hb_001550_060--Hb_006420_040 Hb_003206_130 Hb_003206_130 Hb_001550_060--Hb_003206_130 Hb_000025_320 Hb_000025_320 Hb_001550_060--Hb_000025_320 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_001550_060--Hb_000395_070 Hb_012022_090 Hb_012022_090 Hb_000213_010--Hb_012022_090 Hb_000029_300 Hb_000029_300 Hb_000213_010--Hb_000029_300 Hb_001221_080 Hb_001221_080 Hb_000213_010--Hb_001221_080 Hb_021297_050 Hb_021297_050 Hb_000213_010--Hb_021297_050 Hb_003683_020 Hb_003683_020 Hb_000213_010--Hb_003683_020 Hb_000116_500 Hb_000116_500 Hb_000213_010--Hb_000116_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.65862 8.75087 2.98186 7.5771 7.83969 6.78384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36932 3.49474 7.44197 6.74301 6.67413

CAGE analysis