Hb_000696_070

Information

Type -
Description -
Location Contig696: 29928-40921
Sequence    

Annotation

kegg
ID rcu:RCOM_0311060
description Aspartic proteinase nepenthesin-2 precursor, putative
nr
ID XP_012088469.1
description PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
swissprot
ID Q9LX20
description Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1
trembl
ID W9SCT8
description Aspartic proteinase-like protein 1 OS=Morus notabilis GN=L484_026627 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54575: 30073-33328 , PASA_asmbl_54576: 36602-40527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_070 0.0 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
2 Hb_002781_050 0.0899010146 - - cytochrome B5 isoform 1, putative [Ricinus communis]
3 Hb_000806_130 0.1046535071 - - Adenosine kinase 2 [Theobroma cacao]
4 Hb_001119_070 0.109556448 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
5 Hb_001369_630 0.1097125115 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
6 Hb_001486_350 0.1149344455 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_026527_010 0.1259442233 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
8 Hb_007537_030 0.1290658218 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
9 Hb_012707_010 0.129998529 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
10 Hb_006351_020 0.1310063317 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_001148_100 0.1313175109 - - -
12 Hb_147245_010 0.1333353594 - - casein kinase, putative [Ricinus communis]
13 Hb_003470_110 0.1385637927 - - unnamed protein product [Vitis vinifera]
14 Hb_012707_040 0.139555478 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
15 Hb_029223_040 0.1408013355 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
16 Hb_009674_010 0.1414875322 - - AAEL007687-PA [Aedes aegypti]
17 Hb_011360_110 0.1421152334 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
18 Hb_028639_030 0.1436917287 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
19 Hb_000236_180 0.1437351527 - - serine hydroxymethyltransferase, putative [Ricinus communis]
20 Hb_004326_010 0.1450014855 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000696_070 Hb_000696_070 Hb_002781_050 Hb_002781_050 Hb_000696_070--Hb_002781_050 Hb_000806_130 Hb_000806_130 Hb_000696_070--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000696_070--Hb_001119_070 Hb_001369_630 Hb_001369_630 Hb_000696_070--Hb_001369_630 Hb_001486_350 Hb_001486_350 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_003602_020 Hb_003602_020 Hb_002781_050--Hb_003602_020 Hb_001148_100 Hb_001148_100 Hb_002781_050--Hb_001148_100 Hb_001148_090 Hb_001148_090 Hb_002781_050--Hb_001148_090 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_000806_130--Hb_001486_350 Hb_001329_180 Hb_001329_180 Hb_000806_130--Hb_001329_180 Hb_000236_190 Hb_000236_190 Hb_000806_130--Hb_000236_190 Hb_000806_130--Hb_001119_070 Hb_000300_420 Hb_000300_420 Hb_000806_130--Hb_000300_420 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_006615_230 Hb_006615_230 Hb_001119_070--Hb_006615_230 Hb_158092_040 Hb_158092_040 Hb_001119_070--Hb_158092_040 Hb_189003_070 Hb_189003_070 Hb_001119_070--Hb_189003_070 Hb_000935_040 Hb_000935_040 Hb_001369_630--Hb_000935_040 Hb_002007_320 Hb_002007_320 Hb_001369_630--Hb_002007_320 Hb_000808_150 Hb_000808_150 Hb_001369_630--Hb_000808_150 Hb_003371_070 Hb_003371_070 Hb_001369_630--Hb_003371_070 Hb_000049_160 Hb_000049_160 Hb_001369_630--Hb_000049_160 Hb_001486_350--Hb_000236_190 Hb_012707_010 Hb_012707_010 Hb_001486_350--Hb_012707_010 Hb_001486_350--Hb_002781_050 Hb_001486_350--Hb_000300_420 Hb_026527_010--Hb_001329_180 Hb_003470_110 Hb_003470_110 Hb_026527_010--Hb_003470_110 Hb_020805_140 Hb_020805_140 Hb_026527_010--Hb_020805_140 Hb_002701_090 Hb_002701_090 Hb_026527_010--Hb_002701_090 Hb_026527_010--Hb_002781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45175 2.98554 7.64851 28.6918 0.626547 1.59266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84565 3.32607 4.22323 9.97249 11.5541

CAGE analysis