Hb_000696_110

Information

Type -
Description -
Location Contig696: 61234-67236
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08650g
description POPTRDRAFT_655071; hypothetical protein
nr
ID XP_012088476.1
description PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
swissprot
ID Q94K80
description La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1
trembl
ID A0A067JVE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25358 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54580: 61344-67174
cDNA
(Sanger)
(ID:Location)		 039_H16.ab1: 61344-62045

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_110 0.0 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
2 Hb_000152_140 0.0768999716 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
3 Hb_000057_060 0.0780233699 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
4 Hb_000599_120 0.0792468435 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
5 Hb_000538_210 0.0824013016 - - ATP binding protein, putative [Ricinus communis]
6 Hb_010174_130 0.0834995537 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
7 Hb_002357_040 0.083883653 - - latex-abundant protein [Hevea brasiliensis]
8 Hb_000700_090 0.084475731 - - protein with unknown function [Ricinus communis]
9 Hb_000387_080 0.0905390489 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
10 Hb_000029_030 0.0913297802 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
11 Hb_005941_010 0.0924799273 - - PREDICTED: protein SAND [Jatropha curcas]
12 Hb_127979_010 0.0928246719 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
13 Hb_000365_360 0.0928592061 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_162275_010 0.0931296498 - - -
15 Hb_001047_020 0.09355883 - - -
16 Hb_001476_100 0.0935589462 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003638_030 0.0939888864 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
18 Hb_004223_130 0.0954922224 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002686_270 0.0958930039 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002014_080 0.0959026615 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000696_110 Hb_000696_110 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_003086_020 Hb_003086_020 Hb_000152_140--Hb_003086_020 Hb_002686_270 Hb_002686_270 Hb_000152_140--Hb_002686_270 Hb_002025_320 Hb_002025_320 Hb_000152_140--Hb_002025_320 Hb_000700_090 Hb_000700_090 Hb_000152_140--Hb_000700_090 Hb_005941_010 Hb_005941_010 Hb_000152_140--Hb_005941_010 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_002391_110 Hb_002391_110 Hb_000599_120--Hb_002391_110 Hb_000599_120--Hb_000057_060 Hb_000984_180 Hb_000984_180 Hb_000599_120--Hb_000984_180 Hb_000365_360 Hb_000365_360 Hb_000599_120--Hb_000365_360 Hb_000599_120--Hb_127979_010 Hb_010402_010 Hb_010402_010 Hb_000538_210--Hb_010402_010 Hb_000387_080 Hb_000387_080 Hb_000538_210--Hb_000387_080 Hb_010174_120 Hb_010174_120 Hb_000538_210--Hb_010174_120 Hb_000025_480 Hb_000025_480 Hb_000538_210--Hb_000025_480 Hb_000029_030 Hb_000029_030 Hb_000538_210--Hb_000029_030 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_010174_130--Hb_002506_010 Hb_010174_130--Hb_003404_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200 Hb_002357_040--Hb_000025_480 Hb_001981_090 Hb_001981_090 Hb_002357_040--Hb_001981_090 Hb_001366_220 Hb_001366_220 Hb_002357_040--Hb_001366_220 Hb_000805_090 Hb_000805_090 Hb_002357_040--Hb_000805_090 Hb_002357_040--Hb_000387_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.1845 11.6395 7.92251 11.6154 75.8291 102.415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.228 45.7766 88.0529 29.7712 11.7927

CAGE analysis