Hb_000696_160

Information

Type -
Description -
Location Contig696: 87844-92625
Sequence    

Annotation

kegg
ID rcu:RCOM_1598810
description skp1, putative
nr
ID XP_012088486.1
description PREDICTED: SKP1-like protein 1B [Jatropha curcas]
swissprot
ID Q9FHW7
description SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1
trembl
ID A0A067JJB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25370 PE=4 SV=1
Gene Ontology
ID GO:0006511
description skp1-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54587: 87873-92453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_160 0.0 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
2 Hb_000522_150 0.0903383746 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
3 Hb_002553_040 0.1036907704 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
4 Hb_007423_040 0.1137263016 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
5 Hb_008225_090 0.1157407858 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
6 Hb_000010_110 0.1158238411 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
7 Hb_011909_120 0.1168638237 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
8 Hb_171900_060 0.1171308425 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
9 Hb_000622_180 0.1184254901 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
10 Hb_000236_390 0.1197483656 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
11 Hb_000487_210 0.1227731994 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
12 Hb_002232_040 0.1245419393 - - -
13 Hb_000120_330 0.1246802832 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005463_050 0.1250236359 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
15 Hb_002245_030 0.1257881367 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_003893_030 0.1279451633 - - Protein yrdA, putative [Ricinus communis]
17 Hb_001357_150 0.130069086 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
18 Hb_007451_010 0.130278374 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
19 Hb_005116_060 0.1303775601 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
20 Hb_005306_190 0.130741667 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]

Gene co-expression network

sample Hb_000696_160 Hb_000696_160 Hb_000522_150 Hb_000522_150 Hb_000696_160--Hb_000522_150 Hb_002553_040 Hb_002553_040 Hb_000696_160--Hb_002553_040 Hb_007423_040 Hb_007423_040 Hb_000696_160--Hb_007423_040 Hb_008225_090 Hb_008225_090 Hb_000696_160--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_000696_160--Hb_000010_110 Hb_011909_120 Hb_011909_120 Hb_000696_160--Hb_011909_120 Hb_000738_020 Hb_000738_020 Hb_000522_150--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_000522_150--Hb_000869_080 Hb_002205_110 Hb_002205_110 Hb_000522_150--Hb_002205_110 Hb_005271_220 Hb_005271_220 Hb_000522_150--Hb_005271_220 Hb_024958_010 Hb_024958_010 Hb_000522_150--Hb_024958_010 Hb_000522_150--Hb_000010_110 Hb_002553_040--Hb_000010_110 Hb_003020_270 Hb_003020_270 Hb_002553_040--Hb_003020_270 Hb_000886_050 Hb_000886_050 Hb_002553_040--Hb_000886_050 Hb_002553_040--Hb_000522_150 Hb_000487_210 Hb_000487_210 Hb_002553_040--Hb_000487_210 Hb_005116_060 Hb_005116_060 Hb_002553_040--Hb_005116_060 Hb_005730_120 Hb_005730_120 Hb_007423_040--Hb_005730_120 Hb_007576_080 Hb_007576_080 Hb_007423_040--Hb_007576_080 Hb_002192_010 Hb_002192_010 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120 Hb_002092_120 Hb_002092_120 Hb_008225_090--Hb_002092_120 Hb_000270_470 Hb_000270_470 Hb_008225_090--Hb_000270_470 Hb_000270_310 Hb_000270_310 Hb_008225_090--Hb_000270_310 Hb_008225_090--Hb_000010_110 Hb_000176_020 Hb_000176_020 Hb_008225_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_008225_090--Hb_001025_090 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_002461_060 Hb_002461_060 Hb_011909_120--Hb_002461_060 Hb_011909_120--Hb_007423_040 Hb_011909_120--Hb_005730_120 Hb_000126_010 Hb_000126_010 Hb_011909_120--Hb_000126_010 Hb_002217_510 Hb_002217_510 Hb_011909_120--Hb_002217_510 Hb_001123_030 Hb_001123_030 Hb_011909_120--Hb_001123_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.082 66.1713 54.8215 75.3853 41.737 31.6702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.9219 105.179 23.7048 41.1858 27.844

CAGE analysis