Hb_000696_190

Information

Type -
Description -
Location Contig696: 99070-106478
Sequence    

Annotation

kegg
ID vvi:100251269
description protein MID1-COMPLEMENTING ACTIVITY 1
nr
ID XP_012088489.1
description PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
swissprot
ID Q8L7E9
description Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=1 SV=1
trembl
ID A0A067JVG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25373 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54588: 99128-106298 , PASA_asmbl_54589: 103451-106298 , PASA_asmbl_54591: 105384-106290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_190 0.0 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
2 Hb_000454_100 0.0972489086 - - aldo-keto reductase, putative [Ricinus communis]
3 Hb_007943_150 0.1119602535 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
4 Hb_004710_020 0.1173991707 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_000270_710 0.1179993545 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
6 Hb_000265_070 0.1285879968 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
7 Hb_002902_140 0.134490173 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
8 Hb_000496_130 0.1353859793 - - PREDICTED: fructokinase-1 [Jatropha curcas]
9 Hb_000803_220 0.1364872799 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
10 Hb_164926_010 0.1381052363 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
11 Hb_001597_020 0.142576298 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
12 Hb_035834_010 0.1445614106 - - zinc finger protein, putative [Ricinus communis]
13 Hb_002828_060 0.1476284335 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
14 Hb_010632_020 0.1484124344 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
15 Hb_001348_090 0.1531357337 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
16 Hb_001425_010 0.1547880493 - - sugar transporter, putative [Ricinus communis]
17 Hb_070624_010 0.1548609394 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
18 Hb_010984_010 0.1549978322 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_006816_010 0.1561014042 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001434_020 0.1563112687 - - hypothetical protein RCOM_0841800 [Ricinus communis]

Gene co-expression network

sample Hb_000696_190 Hb_000696_190 Hb_000454_100 Hb_000454_100 Hb_000696_190--Hb_000454_100 Hb_007943_150 Hb_007943_150 Hb_000696_190--Hb_007943_150 Hb_004710_020 Hb_004710_020 Hb_000696_190--Hb_004710_020 Hb_000270_710 Hb_000270_710 Hb_000696_190--Hb_000270_710 Hb_000265_070 Hb_000265_070 Hb_000696_190--Hb_000265_070 Hb_002902_140 Hb_002902_140 Hb_000696_190--Hb_002902_140 Hb_002044_160 Hb_002044_160 Hb_000454_100--Hb_002044_160 Hb_000454_100--Hb_004710_020 Hb_158092_100 Hb_158092_100 Hb_000454_100--Hb_158092_100 Hb_002005_040 Hb_002005_040 Hb_000454_100--Hb_002005_040 Hb_000496_130 Hb_000496_130 Hb_000454_100--Hb_000496_130 Hb_001434_020 Hb_001434_020 Hb_007943_150--Hb_001434_020 Hb_002392_020 Hb_002392_020 Hb_007943_150--Hb_002392_020 Hb_007943_150--Hb_000496_130 Hb_007943_150--Hb_000265_070 Hb_005588_100 Hb_005588_100 Hb_007943_150--Hb_005588_100 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_006006_060 Hb_006006_060 Hb_004710_020--Hb_006006_060 Hb_001348_090 Hb_001348_090 Hb_004710_020--Hb_001348_090 Hb_002320_090 Hb_002320_090 Hb_000270_710--Hb_002320_090 Hb_006916_030 Hb_006916_030 Hb_000270_710--Hb_006916_030 Hb_000270_830 Hb_000270_830 Hb_000270_710--Hb_000270_830 Hb_035834_010 Hb_035834_010 Hb_000270_710--Hb_035834_010 Hb_000964_170 Hb_000964_170 Hb_000270_710--Hb_000964_170 Hb_000358_210 Hb_000358_210 Hb_000265_070--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_000265_070--Hb_009524_030 Hb_070624_010 Hb_070624_010 Hb_000265_070--Hb_070624_010 Hb_000265_070--Hb_002392_020 Hb_000645_180 Hb_000645_180 Hb_000265_070--Hb_000645_180 Hb_014497_060 Hb_014497_060 Hb_002902_140--Hb_014497_060 Hb_019654_020 Hb_019654_020 Hb_002902_140--Hb_019654_020 Hb_002249_080 Hb_002249_080 Hb_002902_140--Hb_002249_080 Hb_000007_060 Hb_000007_060 Hb_002902_140--Hb_000007_060 Hb_106890_010 Hb_106890_010 Hb_002902_140--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_002902_140--Hb_003355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99481 4.97216 27.5833 19.1899 5.23636 6.45401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.79622 1.75003 1.62166 20.6016 39.676

CAGE analysis