Hb_000696_250

Information

Type -
Description -
Location Contig696: 177306-179592
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13540g
description POPTRDRAFT_808742; SEC14 cytosolic factor family protein
nr
ID XP_012089753.1
description PREDICTED: patellin-6 [Jatropha curcas]
swissprot
ID Q9SCU1
description Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1
trembl
ID A0A067JTF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00406 PE=4 SV=1
Gene Ontology
ID GO:0016021
description patellin-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54600: 177477-179605
cDNA
(Sanger)
(ID:Location)		 033_L20.ab1: 178578-179605 , 040_L04.ab1: 178578-179605

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_250 0.0 - - PREDICTED: patellin-6 [Jatropha curcas]
2 Hb_001832_140 0.0942654525 - - endomembrane protein 70 family protein [Medicago truncatula]
3 Hb_000018_120 0.0990816276 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_001252_050 0.0990958842 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
5 Hb_001349_020 0.1004304542 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
6 Hb_009767_030 0.1060834495 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
7 Hb_022092_050 0.1109835188 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
8 Hb_001195_740 0.1127274305 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
9 Hb_006711_040 0.1144731658 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
10 Hb_008143_060 0.1147230215 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
11 Hb_001832_110 0.1196921796 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
12 Hb_000343_220 0.1259675007 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
13 Hb_001776_070 0.1278934138 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
14 Hb_000017_320 0.1292802169 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
15 Hb_002304_190 0.129694254 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
16 Hb_001345_020 0.1306377749 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
17 Hb_005679_110 0.1341719711 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
18 Hb_005730_070 0.1362766815 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
19 Hb_000941_010 0.1396502817 - - hypothetical protein RCOM_0504460 [Ricinus communis]
20 Hb_002685_100 0.1396849302 - - low temperature inducible SLTI66 [Glycine max]

Gene co-expression network

sample Hb_000696_250 Hb_000696_250 Hb_001832_140 Hb_001832_140 Hb_000696_250--Hb_001832_140 Hb_000018_120 Hb_000018_120 Hb_000696_250--Hb_000018_120 Hb_001252_050 Hb_001252_050 Hb_000696_250--Hb_001252_050 Hb_001349_020 Hb_001349_020 Hb_000696_250--Hb_001349_020 Hb_009767_030 Hb_009767_030 Hb_000696_250--Hb_009767_030 Hb_022092_050 Hb_022092_050 Hb_000696_250--Hb_022092_050 Hb_001195_740 Hb_001195_740 Hb_001832_140--Hb_001195_740 Hb_008143_060 Hb_008143_060 Hb_001832_140--Hb_008143_060 Hb_006711_040 Hb_006711_040 Hb_001832_140--Hb_006711_040 Hb_001832_140--Hb_001252_050 Hb_000465_130 Hb_000465_130 Hb_001832_140--Hb_000465_130 Hb_003592_060 Hb_003592_060 Hb_000018_120--Hb_003592_060 Hb_001832_110 Hb_001832_110 Hb_000018_120--Hb_001832_110 Hb_000941_010 Hb_000941_010 Hb_000018_120--Hb_000941_010 Hb_000336_280 Hb_000336_280 Hb_000018_120--Hb_000336_280 Hb_000018_120--Hb_022092_050 Hb_000343_220 Hb_000343_220 Hb_001252_050--Hb_000343_220 Hb_008143_050 Hb_008143_050 Hb_001252_050--Hb_008143_050 Hb_001252_050--Hb_006711_040 Hb_000417_140 Hb_000417_140 Hb_001252_050--Hb_000417_140 Hb_001252_050--Hb_008143_060 Hb_005679_110 Hb_005679_110 Hb_001349_020--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001349_020--Hb_001345_020 Hb_000017_320 Hb_000017_320 Hb_001349_020--Hb_000017_320 Hb_005730_070 Hb_005730_070 Hb_001349_020--Hb_005730_070 Hb_002003_010 Hb_002003_010 Hb_001349_020--Hb_002003_010 Hb_009767_030--Hb_001252_050 Hb_072997_010 Hb_072997_010 Hb_009767_030--Hb_072997_010 Hb_001002_090 Hb_001002_090 Hb_009767_030--Hb_001002_090 Hb_001776_070 Hb_001776_070 Hb_009767_030--Hb_001776_070 Hb_021888_010 Hb_021888_010 Hb_009767_030--Hb_021888_010 Hb_002304_190 Hb_002304_190 Hb_022092_050--Hb_002304_190 Hb_009486_120 Hb_009486_120 Hb_022092_050--Hb_009486_120 Hb_022092_050--Hb_001349_020 Hb_022092_050--Hb_001832_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.143004 8.26685 55.6164 36.3172 0.169566 0.109477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0501738 0.0394767 0 53.6781 12.6021

CAGE analysis