Hb_000696_290

Information

Type -
Description -
Location Contig696: 208949-211878
Sequence    

Annotation

kegg
ID rcu:RCOM_1439060
description hypothetical protein
nr
ID XP_012088657.1
description PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
swissprot
ID O14032
description UPF0664 stress-induced protein C29B12.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29B12.11c PE=2 SV=1
trembl
ID A0A067JUP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23052 PE=4 SV=1
Gene Ontology
ID GO:0005886
description upf0664 stress-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54603: 208914-212047
cDNA
(Sanger)
(ID:Location)		 027_D22.ab1: 211726-212042 , 047_H07.ab1: 208918-211972

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_290 0.0 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
2 Hb_004157_040 0.089585294 - - Rab2 [Hevea brasiliensis]
3 Hb_006256_030 0.09951682 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
4 Hb_011671_100 0.100154766 - - 60S ribosomal protein L15 [Populus trichocarpa]
5 Hb_116608_010 0.1004071619 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
6 Hb_004324_090 0.1004219828 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
7 Hb_000115_220 0.1027115651 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
8 Hb_158445_010 0.1030677445 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
9 Hb_004143_150 0.1033969315 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
10 Hb_000571_020 0.1054199635 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
11 Hb_001691_140 0.1084193566 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
12 Hb_000805_240 0.1094415241 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
13 Hb_006615_240 0.1096773117 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
14 Hb_150196_010 0.1101373865 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
15 Hb_000390_300 0.1102511197 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
16 Hb_017987_050 0.1106838823 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
17 Hb_000069_420 0.1107173527 - - Beclin-1, putative [Ricinus communis]
18 Hb_000527_060 0.110723861 - - Protein C20orf11, putative [Ricinus communis]
19 Hb_000327_230 0.111903795 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
20 Hb_008772_010 0.1134560925 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000696_290 Hb_000696_290 Hb_004157_040 Hb_004157_040 Hb_000696_290--Hb_004157_040 Hb_006256_030 Hb_006256_030 Hb_000696_290--Hb_006256_030 Hb_011671_100 Hb_011671_100 Hb_000696_290--Hb_011671_100 Hb_116608_010 Hb_116608_010 Hb_000696_290--Hb_116608_010 Hb_004324_090 Hb_004324_090 Hb_000696_290--Hb_004324_090 Hb_000115_220 Hb_000115_220 Hb_000696_290--Hb_000115_220 Hb_000527_060 Hb_000527_060 Hb_004157_040--Hb_000527_060 Hb_024439_010 Hb_024439_010 Hb_004157_040--Hb_024439_010 Hb_000805_240 Hb_000805_240 Hb_004157_040--Hb_000805_240 Hb_006615_240 Hb_006615_240 Hb_004157_040--Hb_006615_240 Hb_004696_080 Hb_004696_080 Hb_004157_040--Hb_004696_080 Hb_004157_040--Hb_000115_220 Hb_163256_020 Hb_163256_020 Hb_006256_030--Hb_163256_020 Hb_002060_010 Hb_002060_010 Hb_006256_030--Hb_002060_010 Hb_022318_020 Hb_022318_020 Hb_006256_030--Hb_022318_020 Hb_158445_010 Hb_158445_010 Hb_006256_030--Hb_158445_010 Hb_001718_030 Hb_001718_030 Hb_006256_030--Hb_001718_030 Hb_002260_010 Hb_002260_010 Hb_006256_030--Hb_002260_010 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_003787_010 Hb_003787_010 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_015279_010 Hb_015279_010 Hb_011671_100--Hb_015279_010 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_000417_360 Hb_000417_360 Hb_011671_100--Hb_000417_360 Hb_004052_050 Hb_004052_050 Hb_116608_010--Hb_004052_050 Hb_153544_010 Hb_153544_010 Hb_116608_010--Hb_153544_010 Hb_000172_640 Hb_000172_640 Hb_116608_010--Hb_000172_640 Hb_000331_470 Hb_000331_470 Hb_116608_010--Hb_000331_470 Hb_116608_010--Hb_011671_100 Hb_004324_090--Hb_158445_010 Hb_000310_020 Hb_000310_020 Hb_004324_090--Hb_000310_020 Hb_004324_090--Hb_163256_020 Hb_000069_420 Hb_000069_420 Hb_004324_090--Hb_000069_420 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010 Hb_000115_220--Hb_000527_060 Hb_000193_110 Hb_000193_110 Hb_000115_220--Hb_000193_110 Hb_010175_040 Hb_010175_040 Hb_000115_220--Hb_010175_040 Hb_000261_140 Hb_000261_140 Hb_000115_220--Hb_000261_140 Hb_000035_370 Hb_000035_370 Hb_000115_220--Hb_000035_370 Hb_003992_270 Hb_003992_270 Hb_000115_220--Hb_003992_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.8412 64.719 50.5517 78.0069 67.6258 32.4789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.4164 174.474 78.9557 53.7045 40.5792

CAGE analysis