Hb_000696_330

Information

Type -
Description -
Location Contig696: 226540-233065
Sequence    

Annotation

kegg
ID rcu:RCOM_1439030
description hypothetical protein
nr
ID XP_012088659.1
description PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JH49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23054 PE=4 SV=1
Gene Ontology
ID GO:0009507
description gut esterase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54608: 226603-232952 , PASA_asmbl_54609: 226603-233060
cDNA
(Sanger)
(ID:Location)		 003_B05.ab1: 226603-230467 , 010_J14.ab1: 226603-230341

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_330 0.0 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
2 Hb_000078_120 0.0584180095 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
3 Hb_011386_010 0.064957231 - - mitochondrial carrier protein, putative [Ricinus communis]
4 Hb_004143_060 0.0671424994 - - DNA binding protein, putative [Ricinus communis]
5 Hb_002078_350 0.0674870704 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
6 Hb_000331_260 0.0679708858 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
7 Hb_001168_020 0.068050484 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
8 Hb_007390_010 0.0698963264 - - catalytic, putative [Ricinus communis]
9 Hb_002994_030 0.0701111845 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
10 Hb_000421_220 0.0726290125 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
11 Hb_008453_030 0.0750664249 - - Thioredoxin superfamily protein [Theobroma cacao]
12 Hb_000092_170 0.0756948129 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
13 Hb_003680_120 0.0775091615 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
14 Hb_054865_150 0.0781867589 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
15 Hb_156279_020 0.0797365584 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
16 Hb_006274_030 0.0806943627 - - F-box and wd40 domain protein, putative [Ricinus communis]
17 Hb_004934_100 0.0815833005 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000215_110 0.0817313114 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
19 Hb_004567_090 0.0819918231 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
20 Hb_002289_080 0.0820145082 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]

Gene co-expression network

sample Hb_000696_330 Hb_000696_330 Hb_000078_120 Hb_000078_120 Hb_000696_330--Hb_000078_120 Hb_011386_010 Hb_011386_010 Hb_000696_330--Hb_011386_010 Hb_004143_060 Hb_004143_060 Hb_000696_330--Hb_004143_060 Hb_002078_350 Hb_002078_350 Hb_000696_330--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_000696_330--Hb_000331_260 Hb_001168_020 Hb_001168_020 Hb_000696_330--Hb_001168_020 Hb_006831_140 Hb_006831_140 Hb_000078_120--Hb_006831_140 Hb_002994_030 Hb_002994_030 Hb_000078_120--Hb_002994_030 Hb_000078_120--Hb_002078_350 Hb_000078_120--Hb_011386_010 Hb_000708_030 Hb_000708_030 Hb_000078_120--Hb_000708_030 Hb_005054_110 Hb_005054_110 Hb_011386_010--Hb_005054_110 Hb_011386_010--Hb_002078_350 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_011386_010--Hb_002518_260 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010 Hb_004143_060--Hb_000331_260 Hb_016172_020 Hb_016172_020 Hb_004143_060--Hb_016172_020 Hb_007390_010 Hb_007390_010 Hb_004143_060--Hb_007390_010 Hb_011037_030 Hb_011037_030 Hb_004143_060--Hb_011037_030 Hb_000215_110 Hb_000215_110 Hb_004143_060--Hb_000215_110 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_000331_260--Hb_156279_020 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_000331_260--Hb_011037_030 Hb_000310_090 Hb_000310_090 Hb_001168_020--Hb_000310_090 Hb_002289_080 Hb_002289_080 Hb_001168_020--Hb_002289_080 Hb_001168_020--Hb_000078_120 Hb_003777_320 Hb_003777_320 Hb_001168_020--Hb_003777_320 Hb_000167_080 Hb_000167_080 Hb_001168_020--Hb_000167_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24927 7.26701 6.46867 9.77787 6.66302 13.5573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0677 13.9647 9.63978 9.27418 11.9523

CAGE analysis