Hb_000698_030

Information

Type -
Description -
Location Contig698: 28652-30824
Sequence    

Annotation

kegg
ID rcu:RCOM_0720440
description 60S ribosomal protein L8, putative
nr
ID XP_012068495.1
description PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
swissprot
ID P29766
description 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1
trembl
ID A0A067LAD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03170 PE=4 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54662: 28693-30819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000698_030 0.0 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
2 Hb_001832_060 0.0681462118 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
3 Hb_001235_190 0.0774360684 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
4 Hb_000866_270 0.0793105854 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
5 Hb_028995_040 0.0811727473 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
6 Hb_000462_130 0.0824508008 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
7 Hb_001269_630 0.0840663945 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
8 Hb_002232_440 0.0844294621 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
9 Hb_007317_150 0.0845251892 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
10 Hb_001159_140 0.0856014572 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
11 Hb_000127_180 0.0876868573 - - 40S ribosomal protein S18, putative [Ricinus communis]
12 Hb_003126_080 0.088113527 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
13 Hb_022425_040 0.089125541 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
14 Hb_001540_010 0.0903443337 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
15 Hb_000258_350 0.090434547 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
16 Hb_003078_040 0.0905717271 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
17 Hb_002868_010 0.0917462131 - - 60S ribosomal protein L30, putative [Ricinus communis]
18 Hb_010921_010 0.0919905939 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
19 Hb_023226_040 0.0921069282 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
20 Hb_000023_230 0.0927834914 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]

Gene co-expression network

sample Hb_000698_030 Hb_000698_030 Hb_001832_060 Hb_001832_060 Hb_000698_030--Hb_001832_060 Hb_001235_190 Hb_001235_190 Hb_000698_030--Hb_001235_190 Hb_000866_270 Hb_000866_270 Hb_000698_030--Hb_000866_270 Hb_028995_040 Hb_028995_040 Hb_000698_030--Hb_028995_040 Hb_000462_130 Hb_000462_130 Hb_000698_030--Hb_000462_130 Hb_001269_630 Hb_001269_630 Hb_000698_030--Hb_001269_630 Hb_004453_170 Hb_004453_170 Hb_001832_060--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001832_060--Hb_001269_630 Hb_008173_090 Hb_008173_090 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_001259_090 Hb_001259_090 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_001534_050 Hb_001534_050 Hb_000462_130--Hb_001534_050 Hb_000462_130--Hb_004453_170 Hb_000462_130--Hb_001832_060 Hb_000462_130--Hb_028995_040 Hb_000462_130--Hb_003078_040 Hb_001269_630--Hb_002110_120 Hb_007317_150 Hb_007317_150 Hb_001269_630--Hb_007317_150 Hb_003656_070 Hb_003656_070 Hb_001269_630--Hb_003656_070 Hb_000020_060 Hb_000020_060 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
291.287 144.114 156.177 101.659 209.151 148.249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
322.844 463.236 189.412 159.393 53.459

CAGE analysis