Hb_000699_020

Information

Type -
Description -
Location Contig699: 22032-26927
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03480g
description POPTRDRAFT_573711; phosphoenolpyruvate-carboxylase kinase family protein
nr
ID XP_012089319.1
description PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
swissprot
ID Q9SPK4
description Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1
trembl
ID A0A067JIF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23539 PE=4 SV=1
Gene Ontology
ID GO:0004672
description phosphoenolpyruvate carboxylase kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54668: 22209-22821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_020 0.0 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
2 Hb_003687_140 0.1428536245 - - BnaCnng65050D [Brassica napus]
3 Hb_003756_010 0.1624911242 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
4 Hb_000510_100 0.1626828301 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_002471_170 0.169862016 - - -
6 Hb_000926_290 0.1748995847 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000680_150 0.1806564029 - - PREDICTED: protein STU1-like [Jatropha curcas]
8 Hb_180333_010 0.1873325295 - - -
9 Hb_006120_200 0.1882964914 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
10 Hb_000085_270 0.1924330934 - - PREDICTED: pirin-like protein [Malus domestica]
11 Hb_004070_030 0.1925272916 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_027472_090 0.193388858 - - -
13 Hb_027380_040 0.1936451947 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
14 Hb_001386_130 0.1939070336 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
15 Hb_002307_050 0.1940352158 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
16 Hb_007849_040 0.1960352319 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
17 Hb_124315_040 0.1966781731 - - hypothetical protein 19 [Hevea brasiliensis]
18 Hb_002660_140 0.1967583779 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
19 Hb_004522_040 0.1970899073 - - PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
20 Hb_001140_160 0.1982354394 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000699_020 Hb_000699_020 Hb_003687_140 Hb_003687_140 Hb_000699_020--Hb_003687_140 Hb_003756_010 Hb_003756_010 Hb_000699_020--Hb_003756_010 Hb_000510_100 Hb_000510_100 Hb_000699_020--Hb_000510_100 Hb_002471_170 Hb_002471_170 Hb_000699_020--Hb_002471_170 Hb_000926_290 Hb_000926_290 Hb_000699_020--Hb_000926_290 Hb_000680_150 Hb_000680_150 Hb_000699_020--Hb_000680_150 Hb_003687_140--Hb_000926_290 Hb_030765_020 Hb_030765_020 Hb_003687_140--Hb_030765_020 Hb_004607_150 Hb_004607_150 Hb_003687_140--Hb_004607_150 Hb_029584_140 Hb_029584_140 Hb_003687_140--Hb_029584_140 Hb_005031_070 Hb_005031_070 Hb_003687_140--Hb_005031_070 Hb_010872_060 Hb_010872_060 Hb_003756_010--Hb_010872_060 Hb_175445_010 Hb_175445_010 Hb_003756_010--Hb_175445_010 Hb_012799_060 Hb_012799_060 Hb_003756_010--Hb_012799_060 Hb_001140_160 Hb_001140_160 Hb_003756_010--Hb_001140_160 Hb_000078_030 Hb_000078_030 Hb_003756_010--Hb_000078_030 Hb_019516_040 Hb_019516_040 Hb_000510_100--Hb_019516_040 Hb_000184_040 Hb_000184_040 Hb_000510_100--Hb_000184_040 Hb_000762_020 Hb_000762_020 Hb_000510_100--Hb_000762_020 Hb_000282_060 Hb_000282_060 Hb_000510_100--Hb_000282_060 Hb_004072_010 Hb_004072_010 Hb_000510_100--Hb_004072_010 Hb_000567_200 Hb_000567_200 Hb_000510_100--Hb_000567_200 Hb_027472_090 Hb_027472_090 Hb_002471_170--Hb_027472_090 Hb_180333_010 Hb_180333_010 Hb_002471_170--Hb_180333_010 Hb_000788_120 Hb_000788_120 Hb_002471_170--Hb_000788_120 Hb_002471_170--Hb_003687_140 Hb_000521_150 Hb_000521_150 Hb_002471_170--Hb_000521_150 Hb_002471_170--Hb_000926_290 Hb_003226_150 Hb_003226_150 Hb_000926_290--Hb_003226_150 Hb_002529_100 Hb_002529_100 Hb_000926_290--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_000926_290--Hb_003581_090 Hb_000008_320 Hb_000008_320 Hb_000926_290--Hb_000008_320 Hb_008695_190 Hb_008695_190 Hb_000926_290--Hb_008695_190 Hb_000926_290--Hb_000521_150 Hb_001386_130 Hb_001386_130 Hb_000680_150--Hb_001386_130 Hb_000590_090 Hb_000590_090 Hb_000680_150--Hb_000590_090 Hb_007451_030 Hb_007451_030 Hb_000680_150--Hb_007451_030 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_001514_020 Hb_001514_020 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.5376 15.9866 0.838038 5.13773 11.5793 33.1705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.0515 31.2842 18.6178 3.68285 0.193208

CAGE analysis