Hb_000699_040

Information

Type -
Description -
Location Contig699: 38618-57483
Sequence    

Annotation

kegg
ID rcu:RCOM_0608880
description hypothetical protein
nr
ID XP_012089316.1
description PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54672: 42921-43235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_040 0.0 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
2 Hb_004052_020 0.1001523321 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
3 Hb_003638_080 0.1045014298 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
4 Hb_001214_140 0.110024363 - - 60S ribosomal protein L27a, putative [Ricinus communis]
5 Hb_012753_230 0.1179393068 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
6 Hb_001504_050 0.1200591708 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
7 Hb_004724_160 0.1224271868 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
8 Hb_000451_060 0.1262862204 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
9 Hb_003927_140 0.1291957968 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
10 Hb_009384_020 0.1296332374 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
11 Hb_003058_080 0.1297494062 - - Chaperonin 10 isoform 1 [Theobroma cacao]
12 Hb_000057_070 0.1301719785 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
13 Hb_007885_010 0.1326930347 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
14 Hb_000191_030 0.1373983596 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
15 Hb_002716_090 0.137642225 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
16 Hb_000159_070 0.1376428995 - - JHL03K20.4 [Jatropha curcas]
17 Hb_001538_120 0.1379258305 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
18 Hb_000025_600 0.1390085402 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
19 Hb_001512_050 0.1410031202 - - copine, putative [Ricinus communis]
20 Hb_000526_150 0.1416651824 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000699_040 Hb_000699_040 Hb_004052_020 Hb_004052_020 Hb_000699_040--Hb_004052_020 Hb_003638_080 Hb_003638_080 Hb_000699_040--Hb_003638_080 Hb_001214_140 Hb_001214_140 Hb_000699_040--Hb_001214_140 Hb_012753_230 Hb_012753_230 Hb_000699_040--Hb_012753_230 Hb_001504_050 Hb_001504_050 Hb_000699_040--Hb_001504_050 Hb_004724_160 Hb_004724_160 Hb_000699_040--Hb_004724_160 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_000134_020 Hb_000134_020 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_003638_080--Hb_001214_140 Hb_002716_090 Hb_002716_090 Hb_001214_140--Hb_002716_090 Hb_000438_220 Hb_000438_220 Hb_001214_140--Hb_000438_220 Hb_001638_260 Hb_001638_260 Hb_001214_140--Hb_001638_260 Hb_002742_050 Hb_002742_050 Hb_001214_140--Hb_002742_050 Hb_001214_140--Hb_004052_020 Hb_003641_020 Hb_003641_020 Hb_001214_140--Hb_003641_020 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040 Hb_001504_050--Hb_004052_020 Hb_001504_050--Hb_003058_080 Hb_000451_060 Hb_000451_060 Hb_001504_050--Hb_000451_060 Hb_000191_030 Hb_000191_030 Hb_001504_050--Hb_000191_030 Hb_000297_230 Hb_000297_230 Hb_001504_050--Hb_000297_230 Hb_011311_010 Hb_011311_010 Hb_004724_160--Hb_011311_010 Hb_001248_080 Hb_001248_080 Hb_004724_160--Hb_001248_080 Hb_001269_270 Hb_001269_270 Hb_004724_160--Hb_001269_270 Hb_001268_140 Hb_001268_140 Hb_004724_160--Hb_001268_140 Hb_148930_010 Hb_148930_010 Hb_004724_160--Hb_148930_010 Hb_001045_080 Hb_001045_080 Hb_004724_160--Hb_001045_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.521775 0.413602 0.712763 0.399889 0.745297 0.81198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9787 3.24818 0.627805 0.257767 0.0698272

CAGE analysis