Hb_000699_050

Information

Type -
Description -
Location Contig699: 58104-58367
Sequence    

Annotation

kegg
ID tcc:TCM_026214
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_050 0.0 - - -
2 Hb_009296_060 0.1324718608 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_000343_040 0.1442989065 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
4 Hb_000473_070 0.1566748325 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
5 Hb_000457_130 0.1620646943 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
6 Hb_001366_050 0.1640836252 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
7 Hb_000753_180 0.1643124714 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
8 Hb_005333_210 0.1656385599 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
9 Hb_170878_070 0.1785766941 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
10 Hb_000844_090 0.179379628 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
11 Hb_002200_060 0.1815467944 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
12 Hb_005455_010 0.1820293679 - - PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X1 [Jatropha curcas]
13 Hb_006916_020 0.183197936 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
14 Hb_001300_140 0.1882101401 - - -
15 Hb_004310_170 0.1904027373 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
16 Hb_011440_010 0.1905234214 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
17 Hb_000720_090 0.1906828271 transcription factor TF Family: MYB myb, putative [Ricinus communis]
18 Hb_000265_080 0.1911227072 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
19 Hb_007130_010 0.19582256 - - -
20 Hb_002379_060 0.1994254215 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]

Gene co-expression network

sample Hb_000699_050 Hb_000699_050 Hb_009296_060 Hb_009296_060 Hb_000699_050--Hb_009296_060 Hb_000343_040 Hb_000343_040 Hb_000699_050--Hb_000343_040 Hb_000473_070 Hb_000473_070 Hb_000699_050--Hb_000473_070 Hb_000457_130 Hb_000457_130 Hb_000699_050--Hb_000457_130 Hb_001366_050 Hb_001366_050 Hb_000699_050--Hb_001366_050 Hb_000753_180 Hb_000753_180 Hb_000699_050--Hb_000753_180 Hb_009296_060--Hb_000343_040 Hb_009296_060--Hb_000753_180 Hb_001439_040 Hb_001439_040 Hb_009296_060--Hb_001439_040 Hb_005333_210 Hb_005333_210 Hb_009296_060--Hb_005333_210 Hb_011440_010 Hb_011440_010 Hb_009296_060--Hb_011440_010 Hb_000343_040--Hb_000457_130 Hb_006916_020 Hb_006916_020 Hb_000343_040--Hb_006916_020 Hb_000844_090 Hb_000844_090 Hb_000343_040--Hb_000844_090 Hb_000566_110 Hb_000566_110 Hb_000343_040--Hb_000566_110 Hb_002200_060 Hb_002200_060 Hb_000473_070--Hb_002200_060 Hb_002272_230 Hb_002272_230 Hb_000473_070--Hb_002272_230 Hb_003842_010 Hb_003842_010 Hb_000473_070--Hb_003842_010 Hb_000473_070--Hb_009296_060 Hb_001345_010 Hb_001345_010 Hb_000473_070--Hb_001345_010 Hb_000465_180 Hb_000465_180 Hb_000457_130--Hb_000465_180 Hb_001597_110 Hb_001597_110 Hb_000457_130--Hb_001597_110 Hb_001300_140 Hb_001300_140 Hb_000457_130--Hb_001300_140 Hb_009812_010 Hb_009812_010 Hb_000457_130--Hb_009812_010 Hb_000457_130--Hb_000844_090 Hb_011576_010 Hb_011576_010 Hb_000457_130--Hb_011576_010 Hb_001366_050--Hb_011440_010 Hb_005614_030 Hb_005614_030 Hb_001366_050--Hb_005614_030 Hb_001366_050--Hb_005333_210 Hb_170878_070 Hb_170878_070 Hb_001366_050--Hb_170878_070 Hb_001366_050--Hb_000457_130 Hb_001366_050--Hb_001300_140 Hb_000753_180--Hb_001300_140 Hb_000753_180--Hb_006916_020 Hb_000753_180--Hb_011440_010 Hb_000836_260 Hb_000836_260 Hb_000753_180--Hb_000836_260 Hb_000753_180--Hb_005333_210 Hb_009150_060 Hb_009150_060 Hb_000753_180--Hb_009150_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.0587 8.73638 2.85327 0.219815 0.68272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530128 0.838832 0.553443 20.7974 10.1254

CAGE analysis