Hb_000699_080

Information

Type -
Description -
Location Contig699: 68792-70150
Sequence    

Annotation

kegg
ID rcu:RCOM_0608630
description hypothetical protein
nr
ID XP_012089314.1
description PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SR19
description Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=2 SV=1
trembl
ID A0A067JUQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23533 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54674: 68922-70434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_080 0.0 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
2 Hb_002686_060 0.1153707797 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006925_030 0.1234856873 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
4 Hb_003336_020 0.1265565265 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
5 Hb_000038_020 0.1360359171 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
6 Hb_000120_900 0.1429869651 - - catalase [Hevea brasiliensis]
7 Hb_168031_020 0.1438164949 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
8 Hb_004987_030 0.1452707128 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
9 Hb_000359_070 0.1457326897 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
10 Hb_000667_140 0.1473264957 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
11 Hb_000890_110 0.1486775777 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
12 Hb_088080_030 0.1572539581 - - ribosomal protein S4 [Hevea brasiliensis]
13 Hb_000012_440 0.1573564627 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
14 Hb_012940_020 0.1630710838 - - zeaxanthin epoxidase, putative [Ricinus communis]
15 Hb_159305_010 0.1754415903 - - rpl2 [Jatropha curcas]
16 Hb_000360_010 0.1767531795 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_189099_020 0.1779670106 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
18 Hb_000012_010 0.1784292231 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
19 Hb_001484_080 0.1788040865 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
20 Hb_000367_140 0.1793655828 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000699_080 Hb_000699_080 Hb_002686_060 Hb_002686_060 Hb_000699_080--Hb_002686_060 Hb_006925_030 Hb_006925_030 Hb_000699_080--Hb_006925_030 Hb_003336_020 Hb_003336_020 Hb_000699_080--Hb_003336_020 Hb_000038_020 Hb_000038_020 Hb_000699_080--Hb_000038_020 Hb_000120_900 Hb_000120_900 Hb_000699_080--Hb_000120_900 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_002686_060--Hb_000038_020 Hb_002686_060--Hb_003336_020 Hb_000012_010 Hb_000012_010 Hb_002686_060--Hb_000012_010 Hb_000359_070 Hb_000359_070 Hb_002686_060--Hb_000359_070 Hb_002686_060--Hb_168031_020 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_006925_030--Hb_002686_060 Hb_073490_010 Hb_073490_010 Hb_006925_030--Hb_073490_010 Hb_012940_020 Hb_012940_020 Hb_003336_020--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_003336_020--Hb_028960_010 Hb_003336_020--Hb_000359_070 Hb_156850_020 Hb_156850_020 Hb_003336_020--Hb_156850_020 Hb_000667_140 Hb_000667_140 Hb_000038_020--Hb_000667_140 Hb_000038_020--Hb_168031_020 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_000120_900--Hb_006925_030 Hb_000120_900--Hb_000667_140 Hb_000120_900--Hb_002686_060 Hb_159305_010 Hb_159305_010 Hb_000120_900--Hb_159305_010 Hb_000120_900--Hb_000038_020 Hb_168031_020--Hb_005332_150 Hb_001793_030 Hb_001793_030 Hb_168031_020--Hb_001793_030 Hb_000890_110 Hb_000890_110 Hb_168031_020--Hb_000890_110 Hb_168031_020--Hb_000359_070 Hb_078477_060 Hb_078477_060 Hb_168031_020--Hb_078477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79668 4.0296 14.6656 7.69363 2.64948 3.4781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67303 9.66955 6.59839 7.45528 139.491

CAGE analysis