Hb_000699_120

Information

Type -
Description -
Location Contig699: 86307-87158
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04170g
description POPTRDRAFT_571077; DNA-binding family protein
nr
ID XP_002319649.1
description DNA-binding family protein [Populus trichocarpa]
swissprot
ID Q8GWQ2
description AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana GN=AHL20 PE=2 SV=1
trembl
ID B9I5L9
description DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0013s04170g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_120 0.0 - - DNA-binding family protein [Populus trichocarpa]
2 Hb_000178_110 0.1479733727 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000077_410 0.1612997175 - - protein with unknown function [Ricinus communis]
4 Hb_113951_010 0.1628309067 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
5 Hb_012725_110 0.1762814331 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
6 Hb_004705_030 0.1782768611 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000836_500 0.1847954371 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
8 Hb_007336_040 0.1931423103 - - protein binding protein, putative [Ricinus communis]
9 Hb_012366_020 0.1939248668 - - unnamed protein product [Vitis vinifera]
10 Hb_007120_070 0.1971990612 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
11 Hb_002260_090 0.1976314632 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
12 Hb_001671_060 0.200836722 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
13 Hb_006018_030 0.202088955 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
14 Hb_004206_030 0.2051508118 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
15 Hb_002000_110 0.206816733 - - ASR-like protein 2 [Hevea brasiliensis]
16 Hb_029584_140 0.2091713937 - - senescence-associated family protein [Populus trichocarpa]
17 Hb_000002_390 0.2091968582 - - DNA binding protein, putative [Ricinus communis]
18 Hb_075449_050 0.2096475589 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
19 Hb_002099_050 0.211614159 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003020_310 0.2141741853 - - glycosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000699_120 Hb_000699_120 Hb_000178_110 Hb_000178_110 Hb_000699_120--Hb_000178_110 Hb_000077_410 Hb_000077_410 Hb_000699_120--Hb_000077_410 Hb_113951_010 Hb_113951_010 Hb_000699_120--Hb_113951_010 Hb_012725_110 Hb_012725_110 Hb_000699_120--Hb_012725_110 Hb_004705_030 Hb_004705_030 Hb_000699_120--Hb_004705_030 Hb_000836_500 Hb_000836_500 Hb_000699_120--Hb_000836_500 Hb_000178_110--Hb_000836_500 Hb_029584_140 Hb_029584_140 Hb_000178_110--Hb_029584_140 Hb_007120_070 Hb_007120_070 Hb_000178_110--Hb_007120_070 Hb_000178_110--Hb_012725_110 Hb_012799_060 Hb_012799_060 Hb_000178_110--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_000178_110--Hb_000580_170 Hb_003020_310 Hb_003020_310 Hb_000077_410--Hb_003020_310 Hb_000077_410--Hb_000178_110 Hb_000077_410--Hb_012725_110 Hb_002260_090 Hb_002260_090 Hb_000077_410--Hb_002260_090 Hb_000077_410--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_000077_410--Hb_002291_030 Hb_113951_010--Hb_000178_110 Hb_000784_130 Hb_000784_130 Hb_113951_010--Hb_000784_130 Hb_015974_010 Hb_015974_010 Hb_113951_010--Hb_015974_010 Hb_012662_010 Hb_012662_010 Hb_113951_010--Hb_012662_010 Hb_000130_390 Hb_000130_390 Hb_113951_010--Hb_000130_390 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_012725_110--Hb_000836_500 Hb_012725_110--Hb_002291_030 Hb_027892_010 Hb_027892_010 Hb_004705_030--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_004705_030--Hb_000249_090 Hb_000548_040 Hb_000548_040 Hb_004705_030--Hb_000548_040 Hb_004705_030--Hb_012725_110 Hb_075449_050 Hb_075449_050 Hb_004705_030--Hb_075449_050 Hb_000836_500--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_000836_500--Hb_002928_110 Hb_000836_500--Hb_029584_140 Hb_002936_050 Hb_002936_050 Hb_000836_500--Hb_002936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0502 0.0272487 0 0 0.152152 0.0716479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.93192 0.635116 0.88862 0.0986687 0

CAGE analysis