Hb_000699_140

Information

Type transcription factor
Description TF Family: Orphans
Location Contig699: 96323-100108
Sequence    

Annotation

kegg
ID rcu:RCOM_0608080
description ethylene receptor, putative
nr
ID XP_002521957.1
description ethylene receptor, putative [Ricinus communis]
swissprot
ID Q9ZTP3
description Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1
trembl
ID B9S7I8
description Ethylene receptor, putative OS=Ricinus communis GN=RCOM_0608080 PE=4 SV=1
Gene Ontology
ID GO:0005789
description protein ein4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54682: 97550-97931 , PASA_asmbl_54683: 96333-100019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_140 0.0 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
2 Hb_001100_050 0.051526813 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
3 Hb_000620_010 0.0749167615 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
4 Hb_007477_080 0.0777566738 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001862_190 0.0796382079 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
6 Hb_000020_190 0.080122657 - - hypothetical protein RCOM_0452240 [Ricinus communis]
7 Hb_000512_060 0.0837830672 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
8 Hb_006922_100 0.087800543 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
9 Hb_005663_060 0.0886113741 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
10 Hb_001322_190 0.0904202722 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
11 Hb_000190_140 0.0908570791 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
12 Hb_000120_950 0.0921403786 - - PREDICTED: protein GRIP [Jatropha curcas]
13 Hb_002811_360 0.0922453736 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
14 Hb_005539_220 0.0926423476 - - spermidine synthase 1, putative [Ricinus communis]
15 Hb_003929_160 0.093693755 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
16 Hb_000072_220 0.0941169512 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
17 Hb_000409_020 0.0946649463 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
18 Hb_000754_060 0.0952059316 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
19 Hb_048937_040 0.0958351385 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
20 Hb_002105_040 0.0958558569 - - -

Gene co-expression network

sample Hb_000699_140 Hb_000699_140 Hb_001100_050 Hb_001100_050 Hb_000699_140--Hb_001100_050 Hb_000620_010 Hb_000620_010 Hb_000699_140--Hb_000620_010 Hb_007477_080 Hb_007477_080 Hb_000699_140--Hb_007477_080 Hb_001862_190 Hb_001862_190 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060 Hb_001100_050--Hb_007477_080 Hb_001100_050--Hb_000620_010 Hb_003641_050 Hb_003641_050 Hb_001100_050--Hb_003641_050 Hb_006816_390 Hb_006816_390 Hb_001100_050--Hb_006816_390 Hb_000072_220 Hb_000072_220 Hb_001100_050--Hb_000072_220 Hb_000120_950 Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_000436_070 Hb_000436_070 Hb_000620_010--Hb_000436_070 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_000009_170 Hb_000009_170 Hb_000620_010--Hb_000009_170 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_007477_080--Hb_006816_390 Hb_007477_080--Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_007477_080--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_007477_080--Hb_000134_090 Hb_001862_190--Hb_033153_050 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_001862_190--Hb_005662_030 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_000181_070 Hb_000181_070 Hb_000512_060--Hb_000181_070 Hb_002105_040 Hb_002105_040 Hb_000512_060--Hb_002105_040 Hb_000230_120 Hb_000230_120 Hb_000512_060--Hb_000230_120 Hb_009178_030 Hb_009178_030 Hb_000512_060--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2998 4.60133 3.83239 5.58838 6.62546 11.4197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60139 6.30146 12.2289 4.4427 4.40069

CAGE analysis