Hb_000699_160

Information

Type -
Description -
Location Contig699: 112714-115073
Sequence    

Annotation

kegg
ID egr:104432522
description C-Myc-binding protein homolog
nr
ID XP_012089302.1
description PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
swissprot
ID Q5R7A8
description C-Myc-binding protein OS=Pongo abelii GN=MYCBP PE=3 SV=3
trembl
ID A0A059D3G1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02129 PE=4 SV=1
Gene Ontology
ID GO:0003713
description c-myc-binding protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54687: 112693-115058 , PASA_asmbl_54688: 112747-115073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_160 0.0 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
2 Hb_010672_060 0.0627397274 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
3 Hb_005063_050 0.0632941713 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
4 Hb_001221_310 0.0700343396 - - sec61 gamma subunit, putative [Ricinus communis]
5 Hb_143496_010 0.0729606037 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
6 Hb_012022_120 0.0736279964 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
7 Hb_002830_020 0.0737685807 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_002431_050 0.0743634599 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
9 Hb_002864_050 0.076307169 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
10 Hb_134949_020 0.0776946717 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
11 Hb_003893_050 0.0777311707 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
12 Hb_001141_140 0.0807361665 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
13 Hb_000617_090 0.082244913 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
14 Hb_000363_320 0.0825566993 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
15 Hb_000029_200 0.0855483184 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
16 Hb_000312_090 0.0868302706 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
17 Hb_006925_040 0.0873450038 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
18 Hb_003226_210 0.0874206333 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
19 Hb_008921_020 0.0876709094 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
20 Hb_001842_040 0.0881342337 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]

Gene co-expression network

sample Hb_000699_160 Hb_000699_160 Hb_010672_060 Hb_010672_060 Hb_000699_160--Hb_010672_060 Hb_005063_050 Hb_005063_050 Hb_000699_160--Hb_005063_050 Hb_001221_310 Hb_001221_310 Hb_000699_160--Hb_001221_310 Hb_143496_010 Hb_143496_010 Hb_000699_160--Hb_143496_010 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020 Hb_002431_050 Hb_002431_050 Hb_010672_060--Hb_002431_050 Hb_010672_060--Hb_005063_050 Hb_003893_050 Hb_003893_050 Hb_010672_060--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_007416_020 Hb_007416_020 Hb_010672_060--Hb_007416_020 Hb_005063_050--Hb_003893_050 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_005063_050--Hb_143496_010 Hb_000312_090 Hb_000312_090 Hb_001221_310--Hb_000312_090 Hb_006452_040 Hb_006452_040 Hb_001221_310--Hb_006452_040 Hb_000617_090 Hb_000617_090 Hb_001221_310--Hb_000617_090 Hb_001221_310--Hb_010672_060 Hb_001155_040 Hb_001155_040 Hb_001221_310--Hb_001155_040 Hb_010175_040 Hb_010175_040 Hb_143496_010--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_143496_010--Hb_003226_100 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_001141_140 Hb_001141_140 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020 Hb_000505_140 Hb_000505_140 Hb_012022_120--Hb_000505_140 Hb_012022_120--Hb_002830_020 Hb_032202_090 Hb_032202_090 Hb_012022_120--Hb_032202_090 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020 Hb_002830_020--Hb_002431_050 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_000201_120 Hb_000201_120 Hb_002830_020--Hb_000201_120 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_003581_150 Hb_003581_150 Hb_002830_020--Hb_003581_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.5332 9.0283 26.2096 39.506 30.781 32.4241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.4984 119.187 45.2348 17.8534 13.3294

CAGE analysis