Hb_000699_170

Information

Type -
Description -
Location Contig699: 117996-129391
Sequence    

Annotation

kegg
ID rcu:RCOM_0608040
description myosin XI, putative
nr
ID XP_002521953.1
description myosin XI, putative [Ricinus communis]
swissprot
ID F4HWY6
description Myosin-11 OS=Arabidopsis thaliana GN=XI-E PE=3 SV=1
trembl
ID B9S7I4
description Myosin XI, putative OS=Ricinus communis GN=RCOM_0608040 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin family protein with dil domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54689: 117864-118523 , PASA_asmbl_54691: 120706-121450 , PASA_asmbl_54692: 122725-124074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_170 0.0 - - myosin XI, putative [Ricinus communis]
2 Hb_000107_610 0.1920401315 - - protein binding protein, putative [Ricinus communis]
3 Hb_000010_120 0.1956630802 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
4 Hb_006478_180 0.1990724087 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
5 Hb_034585_020 0.2018552244 - - -
6 Hb_000007_110 0.2105417445 - - PREDICTED: peroxidase 11 [Jatropha curcas]
7 Hb_002006_140 0.2127915232 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
8 Hb_003428_100 0.212906952 - - Polygalacturonase precursor, putative [Ricinus communis]
9 Hb_024621_030 0.2167732625 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
10 Hb_008406_010 0.2295315526 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
11 Hb_112082_030 0.2334181367 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_001101_030 0.2334940805 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
13 Hb_000025_020 0.2338861814 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
14 Hb_013652_010 0.2341019215 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_003538_020 0.2341753396 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
16 Hb_001045_050 0.2377882177 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
17 Hb_027445_090 0.2387655975 - - oleosin 18.2 kDa-like [Jatropha curcas]
18 Hb_004800_170 0.2410707122 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
19 Hb_001168_010 0.2421431735 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
20 Hb_002498_040 0.2445187724 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]

Gene co-expression network

sample Hb_000699_170 Hb_000699_170 Hb_000107_610 Hb_000107_610 Hb_000699_170--Hb_000107_610 Hb_000010_120 Hb_000010_120 Hb_000699_170--Hb_000010_120 Hb_006478_180 Hb_006478_180 Hb_000699_170--Hb_006478_180 Hb_034585_020 Hb_034585_020 Hb_000699_170--Hb_034585_020 Hb_000007_110 Hb_000007_110 Hb_000699_170--Hb_000007_110 Hb_002006_140 Hb_002006_140 Hb_000699_170--Hb_002006_140 Hb_159769_010 Hb_159769_010 Hb_000107_610--Hb_159769_010 Hb_000352_080 Hb_000352_080 Hb_000107_610--Hb_000352_080 Hb_003891_060 Hb_003891_060 Hb_000107_610--Hb_003891_060 Hb_000107_610--Hb_034585_020 Hb_004217_010 Hb_004217_010 Hb_000107_610--Hb_004217_010 Hb_000563_610 Hb_000563_610 Hb_000107_610--Hb_000563_610 Hb_000010_120--Hb_006478_180 Hb_002325_020 Hb_002325_020 Hb_000010_120--Hb_002325_020 Hb_000010_120--Hb_000007_110 Hb_002758_040 Hb_002758_040 Hb_000010_120--Hb_002758_040 Hb_011382_030 Hb_011382_030 Hb_000010_120--Hb_011382_030 Hb_001999_220 Hb_001999_220 Hb_000010_120--Hb_001999_220 Hb_003538_020 Hb_003538_020 Hb_006478_180--Hb_003538_020 Hb_006478_180--Hb_002758_040 Hb_132880_030 Hb_132880_030 Hb_006478_180--Hb_132880_030 Hb_112082_030 Hb_112082_030 Hb_006478_180--Hb_112082_030 Hb_005511_050 Hb_005511_050 Hb_006478_180--Hb_005511_050 Hb_131864_020 Hb_131864_020 Hb_034585_020--Hb_131864_020 Hb_007044_070 Hb_007044_070 Hb_034585_020--Hb_007044_070 Hb_001168_010 Hb_001168_010 Hb_034585_020--Hb_001168_010 Hb_001775_050 Hb_001775_050 Hb_034585_020--Hb_001775_050 Hb_000631_130 Hb_000631_130 Hb_034585_020--Hb_000631_130 Hb_000057_160 Hb_000057_160 Hb_034585_020--Hb_000057_160 Hb_000135_050 Hb_000135_050 Hb_000007_110--Hb_000135_050 Hb_000007_110--Hb_159769_010 Hb_176979_010 Hb_176979_010 Hb_000007_110--Hb_176979_010 Hb_000007_110--Hb_006478_180 Hb_000007_110--Hb_003538_020 Hb_003428_100 Hb_003428_100 Hb_002006_140--Hb_003428_100 Hb_002006_140--Hb_112082_030 Hb_001250_140 Hb_001250_140 Hb_002006_140--Hb_001250_140 Hb_001045_050 Hb_001045_050 Hb_002006_140--Hb_001045_050 Hb_002311_240 Hb_002311_240 Hb_002006_140--Hb_002311_240 Hb_005389_190 Hb_005389_190 Hb_002006_140--Hb_005389_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12698 1.01588 0.663839 0.0772617 0.0116309 0.11113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.467697 0.295901 0.22218 6.9218 0.0154966

CAGE analysis