Hb_000699_190

Information

Type -
Description -
Location Contig699: 154522-156829
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02320g
description GRF1-INTERACTING FACTOR 1 family protein
nr
ID ABK94681.1
description unknown [Populus trichocarpa]
swissprot
ID Q8L8A5
description GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1
trembl
ID A9PE78
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0003713
description grf1-interacting factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_190 0.0 - - unknown [Populus trichocarpa]
2 Hb_042553_010 0.1805766495 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
3 Hb_004611_060 0.1868452927 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
4 Hb_001131_070 0.1877957174 - - PREDICTED: uncharacterized protein LOC105638217 [Jatropha curcas]
5 Hb_187697_010 0.1909172667 - - TMV resistance protein N, putative [Ricinus communis]
6 Hb_073096_010 0.1924863725 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
7 Hb_007137_030 0.194545342 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
8 Hb_001248_110 0.2084327603 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
9 Hb_000431_030 0.2145886901 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
10 Hb_008554_010 0.2152238091 - - -
11 Hb_003637_020 0.21610944 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011120_020 0.2176849733 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
13 Hb_123885_010 0.2180432319 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_116635_010 0.2196878707 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_155642_010 0.2231696697 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
16 Hb_183539_010 0.2232686777 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
17 Hb_001608_030 0.2260472171 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
18 Hb_004453_180 0.2264531602 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
19 Hb_003893_020 0.2293780814 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
20 Hb_133508_010 0.2306587864 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000699_190 Hb_000699_190 Hb_042553_010 Hb_042553_010 Hb_000699_190--Hb_042553_010 Hb_004611_060 Hb_004611_060 Hb_000699_190--Hb_004611_060 Hb_001131_070 Hb_001131_070 Hb_000699_190--Hb_001131_070 Hb_187697_010 Hb_187697_010 Hb_000699_190--Hb_187697_010 Hb_073096_010 Hb_073096_010 Hb_000699_190--Hb_073096_010 Hb_007137_030 Hb_007137_030 Hb_000699_190--Hb_007137_030 Hb_042553_010--Hb_007137_030 Hb_001248_110 Hb_001248_110 Hb_042553_010--Hb_001248_110 Hb_001608_030 Hb_001608_030 Hb_042553_010--Hb_001608_030 Hb_116635_010 Hb_116635_010 Hb_042553_010--Hb_116635_010 Hb_006911_060 Hb_006911_060 Hb_042553_010--Hb_006911_060 Hb_183539_010 Hb_183539_010 Hb_042553_010--Hb_183539_010 Hb_070541_030 Hb_070541_030 Hb_004611_060--Hb_070541_030 Hb_000936_040 Hb_000936_040 Hb_004611_060--Hb_000936_040 Hb_004611_060--Hb_187697_010 Hb_035761_010 Hb_035761_010 Hb_004611_060--Hb_035761_010 Hb_011382_050 Hb_011382_050 Hb_004611_060--Hb_011382_050 Hb_008554_010 Hb_008554_010 Hb_001131_070--Hb_008554_010 Hb_001131_070--Hb_073096_010 Hb_004195_030 Hb_004195_030 Hb_001131_070--Hb_004195_030 Hb_002461_080 Hb_002461_080 Hb_001131_070--Hb_002461_080 Hb_001373_080 Hb_001373_080 Hb_001131_070--Hb_001373_080 Hb_000003_430 Hb_000003_430 Hb_187697_010--Hb_000003_430 Hb_000029_280 Hb_000029_280 Hb_187697_010--Hb_000029_280 Hb_000506_130 Hb_000506_130 Hb_187697_010--Hb_000506_130 Hb_127628_010 Hb_127628_010 Hb_187697_010--Hb_127628_010 Hb_008725_190 Hb_008725_190 Hb_187697_010--Hb_008725_190 Hb_003913_030 Hb_003913_030 Hb_187697_010--Hb_003913_030 Hb_073096_010--Hb_002461_080 Hb_073096_010--Hb_008554_010 Hb_000181_450 Hb_000181_450 Hb_073096_010--Hb_000181_450 Hb_000221_070 Hb_000221_070 Hb_073096_010--Hb_000221_070 Hb_007137_030--Hb_001608_030 Hb_093177_010 Hb_093177_010 Hb_007137_030--Hb_093177_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.602433 22.8978 2.23104 8.03413 1.22338 3.5308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104876 0.741771 0 3.35138 0

CAGE analysis