Hb_000699_230

Information

Type -
Description -
Location Contig699: 227226-230575
Sequence    

Annotation

kegg
ID tcc:TCM_026270
description Ankyrin repeat family protein, putative
nr
ID XP_007030509.1
description Ankyrin repeat family protein, putative [Theobroma cacao]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A061F1T7
description Ankyrin repeat family protein, putative OS=Theobroma cacao GN=TCM_026270 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54701: 228242-229731 , PASA_asmbl_54702: 229812-229922 , PASA_asmbl_54703: 230398-230562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_230 0.0 - - Ankyrin repeat family protein, putative [Theobroma cacao]
2 Hb_000997_180 0.0835209823 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000110_300 0.1183116944 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
4 Hb_001268_120 0.1199131028 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000625_090 0.1207208642 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009193_100 0.1241036553 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
7 Hb_002915_060 0.124305106 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
8 Hb_128589_010 0.1270374119 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_004631_210 0.1291157451 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
10 Hb_006501_160 0.1292490989 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
11 Hb_001726_110 0.1303134937 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
12 Hb_000490_060 0.1321357652 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
13 Hb_012317_020 0.1348007733 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_000684_040 0.1349143128 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
15 Hb_008511_100 0.1353403991 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
16 Hb_003747_210 0.1355182816 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
17 Hb_005433_060 0.1363053833 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
18 Hb_002217_220 0.1368133182 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
19 Hb_003327_070 0.138643426 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
20 Hb_007576_200 0.1394329024 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000699_230 Hb_000699_230 Hb_000997_180 Hb_000997_180 Hb_000699_230--Hb_000997_180 Hb_000110_300 Hb_000110_300 Hb_000699_230--Hb_000110_300 Hb_001268_120 Hb_001268_120 Hb_000699_230--Hb_001268_120 Hb_000625_090 Hb_000625_090 Hb_000699_230--Hb_000625_090 Hb_009193_100 Hb_009193_100 Hb_000699_230--Hb_009193_100 Hb_002915_060 Hb_002915_060 Hb_000699_230--Hb_002915_060 Hb_000997_180--Hb_002915_060 Hb_000997_180--Hb_000625_090 Hb_003327_070 Hb_003327_070 Hb_000997_180--Hb_003327_070 Hb_000490_060 Hb_000490_060 Hb_000997_180--Hb_000490_060 Hb_006501_160 Hb_006501_160 Hb_000997_180--Hb_006501_160 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_000110_300--Hb_002915_060 Hb_001956_060 Hb_001956_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_009646_010 Hb_009646_010 Hb_000110_300--Hb_009646_010 Hb_002217_220 Hb_002217_220 Hb_001268_120--Hb_002217_220 Hb_082741_010 Hb_082741_010 Hb_001268_120--Hb_082741_010 Hb_000120_820 Hb_000120_820 Hb_001268_120--Hb_000120_820 Hb_001268_120--Hb_000490_060 Hb_010407_170 Hb_010407_170 Hb_001268_120--Hb_010407_170 Hb_000625_090--Hb_002915_060 Hb_013057_020 Hb_013057_020 Hb_000625_090--Hb_013057_020 Hb_006006_040 Hb_006006_040 Hb_000625_090--Hb_006006_040 Hb_000227_160 Hb_000227_160 Hb_000625_090--Hb_000227_160 Hb_000625_090--Hb_000110_300 Hb_001623_160 Hb_001623_160 Hb_009193_100--Hb_001623_160 Hb_009193_100--Hb_000625_090 Hb_000381_110 Hb_000381_110 Hb_009193_100--Hb_000381_110 Hb_009193_100--Hb_000997_180 Hb_000251_030 Hb_000251_030 Hb_009193_100--Hb_000251_030 Hb_001328_080 Hb_001328_080 Hb_002915_060--Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_002915_060--Hb_007839_020 Hb_011360_050 Hb_011360_050 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_023344_150 Hb_023344_150 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.624927 4.38211 1.32688 2.47423 0.404234 0.82092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38194 1.85765 1.72465 3.66654 1.73043

CAGE analysis