Hb_000699_250

Information

Type -
Description -
Location Contig699: 242022-250656
Sequence    

Annotation

kegg
ID rcu:RCOM_0607560
description Poly(rC)-binding protein, putative
nr
ID XP_002521945.1
description Poly(rC)-binding protein, putative [Ricinus communis]
swissprot
ID Q9SR13
description Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1
trembl
ID B9S7H6
description Poly(RC)-binding protein, putative OS=Ricinus communis GN=RCOM_0607560 PE=4 SV=1
Gene Ontology
ID GO:0003723
description poly -binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54705: 242025-249885 , PASA_asmbl_54706: 242725-243037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_250 0.0 - - Poly(rC)-binding protein, putative [Ricinus communis]
2 Hb_000340_160 0.0591817124 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
3 Hb_042487_010 0.0617235564 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
4 Hb_008714_020 0.0693675675 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
5 Hb_000046_450 0.072061096 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
6 Hb_004970_150 0.0729811143 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
7 Hb_004037_030 0.0766616796 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
8 Hb_000239_070 0.0796952775 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
9 Hb_006816_300 0.0818374669 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
10 Hb_007849_020 0.0828541126 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
11 Hb_025012_010 0.0843741425 - - PREDICTED: importin-4 [Vitis vinifera]
12 Hb_010180_040 0.0843847172 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
13 Hb_024990_010 0.0863059535 - - PREDICTED: la protein 1 [Jatropha curcas]
14 Hb_081879_030 0.0864362972 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
15 Hb_002105_080 0.0875376309 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_029142_010 0.0876684206 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
17 Hb_000567_010 0.0881867133 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
18 Hb_000531_090 0.0891349564 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
19 Hb_005494_020 0.0902221675 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
20 Hb_147737_010 0.0903875868 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000699_250 Hb_000699_250 Hb_000340_160 Hb_000340_160 Hb_000699_250--Hb_000340_160 Hb_042487_010 Hb_042487_010 Hb_000699_250--Hb_042487_010 Hb_008714_020 Hb_008714_020 Hb_000699_250--Hb_008714_020 Hb_000046_450 Hb_000046_450 Hb_000699_250--Hb_000046_450 Hb_004970_150 Hb_004970_150 Hb_000699_250--Hb_004970_150 Hb_004037_030 Hb_004037_030 Hb_000699_250--Hb_004037_030 Hb_000239_070 Hb_000239_070 Hb_000340_160--Hb_000239_070 Hb_000331_190 Hb_000331_190 Hb_000340_160--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_000340_160--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_000340_160--Hb_000567_010 Hb_125092_020 Hb_125092_020 Hb_000340_160--Hb_125092_020 Hb_007849_020 Hb_007849_020 Hb_042487_010--Hb_007849_020 Hb_029142_010 Hb_029142_010 Hb_042487_010--Hb_029142_010 Hb_025012_010 Hb_025012_010 Hb_042487_010--Hb_025012_010 Hb_006816_300 Hb_006816_300 Hb_042487_010--Hb_006816_300 Hb_042487_010--Hb_000340_160 Hb_001019_170 Hb_001019_170 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_008714_020--Hb_000046_450 Hb_000046_450--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_000046_450--Hb_001019_170 Hb_000046_450--Hb_007849_020 Hb_000865_080 Hb_000865_080 Hb_004970_150--Hb_000865_080 Hb_004970_150--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_004970_150--Hb_003428_070 Hb_003935_030 Hb_003935_030 Hb_004970_150--Hb_003935_030 Hb_005914_060 Hb_005914_060 Hb_004970_150--Hb_005914_060 Hb_007904_180 Hb_007904_180 Hb_004037_030--Hb_007904_180 Hb_000002_440 Hb_000002_440 Hb_004037_030--Hb_000002_440 Hb_000096_180 Hb_000096_180 Hb_004037_030--Hb_000096_180 Hb_004037_030--Hb_000239_070 Hb_004037_030--Hb_042487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.4988 63.4893 20.1305 23.8051 71.716 144.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.8587 27.0069 38.0001 43.5888 22.256

CAGE analysis