Hb_000700_030

Information

Type -
Description -
Location Contig700: 37865-38446
Sequence    

Annotation

kegg
ID rcu:RCOM_1721490
description zinc finger protein, putative
nr
ID XP_012085159.1
description PREDICTED: zinc finger protein 3 [Jatropha curcas]
swissprot
ID Q9FFX4
description Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1
trembl
ID A0A067JR31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17574 PE=4 SV=1
Gene Ontology
ID GO:0050789
description zinc finger protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54790: 38265-38606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_030 0.0 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
2 Hb_001195_180 0.2373618813 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
3 Hb_052764_040 0.2499607301 - - syntaxin 125 family protein [Populus trichocarpa]
4 Hb_009620_090 0.2627215037 - - hypothetical protein L484_000980 [Morus notabilis]
5 Hb_000808_120 0.2674962157 - - -
6 Hb_157022_030 0.2675008084 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
7 Hb_000260_650 0.2713957377 - - PREDICTED: protein PFC0760c [Jatropha curcas]
8 Hb_005162_130 0.2743131359 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
9 Hb_051997_020 0.2762416239 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
10 Hb_004453_100 0.2765774868 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000556_130 0.2774856899 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
12 Hb_010998_050 0.2810916448 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
13 Hb_005332_130 0.2822411549 - - Mavicyanin, putative [Ricinus communis]
14 Hb_001016_010 0.282992547 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004162_230 0.2838129808 - - PREDICTED: histone H2B [Jatropha curcas]
16 Hb_011360_130 0.2850533718 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001329_010 0.2878935363 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000197_200 0.2904202357 - - Sec14 cytosolic factor, putative [Ricinus communis]
19 Hb_071781_010 0.2917044586 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
20 Hb_005725_150 0.2924448741 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000700_030 Hb_000700_030 Hb_001195_180 Hb_001195_180 Hb_000700_030--Hb_001195_180 Hb_052764_040 Hb_052764_040 Hb_000700_030--Hb_052764_040 Hb_009620_090 Hb_009620_090 Hb_000700_030--Hb_009620_090 Hb_000808_120 Hb_000808_120 Hb_000700_030--Hb_000808_120 Hb_157022_030 Hb_157022_030 Hb_000700_030--Hb_157022_030 Hb_000260_650 Hb_000260_650 Hb_000700_030--Hb_000260_650 Hb_023765_020 Hb_023765_020 Hb_001195_180--Hb_023765_020 Hb_000282_050 Hb_000282_050 Hb_001195_180--Hb_000282_050 Hb_003399_100 Hb_003399_100 Hb_001195_180--Hb_003399_100 Hb_010998_050 Hb_010998_050 Hb_001195_180--Hb_010998_050 Hb_000529_150 Hb_000529_150 Hb_001195_180--Hb_000529_150 Hb_001454_070 Hb_001454_070 Hb_001195_180--Hb_001454_070 Hb_003038_250 Hb_003038_250 Hb_052764_040--Hb_003038_250 Hb_004449_140 Hb_004449_140 Hb_052764_040--Hb_004449_140 Hb_044653_080 Hb_044653_080 Hb_052764_040--Hb_044653_080 Hb_051997_020 Hb_051997_020 Hb_052764_040--Hb_051997_020 Hb_001214_190 Hb_001214_190 Hb_052764_040--Hb_001214_190 Hb_000926_230 Hb_000926_230 Hb_009620_090--Hb_000926_230 Hb_002397_060 Hb_002397_060 Hb_009620_090--Hb_002397_060 Hb_010488_040 Hb_010488_040 Hb_009620_090--Hb_010488_040 Hb_074836_010 Hb_074836_010 Hb_009620_090--Hb_074836_010 Hb_000174_050 Hb_000174_050 Hb_009620_090--Hb_000174_050 Hb_000544_030 Hb_000544_030 Hb_009620_090--Hb_000544_030 Hb_071781_010 Hb_071781_010 Hb_000808_120--Hb_071781_010 Hb_005332_130 Hb_005332_130 Hb_000808_120--Hb_005332_130 Hb_002343_030 Hb_002343_030 Hb_000808_120--Hb_002343_030 Hb_004112_060 Hb_004112_060 Hb_000808_120--Hb_004112_060 Hb_053073_010 Hb_053073_010 Hb_000808_120--Hb_053073_010 Hb_013834_010 Hb_013834_010 Hb_000808_120--Hb_013834_010 Hb_004162_230 Hb_004162_230 Hb_157022_030--Hb_004162_230 Hb_000139_490 Hb_000139_490 Hb_157022_030--Hb_000139_490 Hb_001329_190 Hb_001329_190 Hb_157022_030--Hb_001329_190 Hb_000556_130 Hb_000556_130 Hb_157022_030--Hb_000556_130 Hb_000663_070 Hb_000663_070 Hb_157022_030--Hb_000663_070 Hb_004449_040 Hb_004449_040 Hb_157022_030--Hb_004449_040 Hb_000960_090 Hb_000960_090 Hb_000260_650--Hb_000960_090 Hb_005901_030 Hb_005901_030 Hb_000260_650--Hb_005901_030 Hb_004155_020 Hb_004155_020 Hb_000260_650--Hb_004155_020 Hb_000288_090 Hb_000288_090 Hb_000260_650--Hb_000288_090 Hb_000668_060 Hb_000668_060 Hb_000260_650--Hb_000668_060 Hb_006970_130 Hb_006970_130 Hb_000260_650--Hb_006970_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.388315 0.209088 2.86471 1.77345 0 0.580609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105692 0.415299 0.433797 0.0341266 0

CAGE analysis