Hb_000700_100

Information

Type -
Description -
Location Contig700: 174573-181664
Sequence    

Annotation

kegg
ID rcu:RCOM_1721260
description hypothetical protein
nr
ID XP_012085137.1
description PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
swissprot
ID Q8GXU5
description Protein SULFUR DEFICIENCY-INDUCED 1 OS=Arabidopsis thaliana GN=SDI1 PE=2 SV=1
trembl
ID A0A067K2B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17563 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_100 0.0 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
2 Hb_007747_120 0.1748468548 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000563_460 0.204515157 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
4 Hb_001504_270 0.2085556262 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
5 Hb_002760_060 0.2156188184 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
6 Hb_003053_060 0.2204376836 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
7 Hb_003086_050 0.2260531907 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_138575_010 0.2278851147 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
9 Hb_000434_050 0.2287795601 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
10 Hb_102100_010 0.2290238225 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_001277_140 0.2292412681 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
12 Hb_000506_140 0.2310020928 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
13 Hb_000015_180 0.2310713262 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
14 Hb_008864_080 0.2322426396 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
15 Hb_002311_490 0.2323241635 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
16 Hb_015978_030 0.2334370899 - - Zinc finger protein GIS2 [Medicago truncatula]
17 Hb_127819_010 0.2352555547 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_116349_050 0.2363523813 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
19 Hb_002217_270 0.2364229087 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
20 Hb_000856_410 0.2370218538 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000700_100 Hb_000700_100 Hb_007747_120 Hb_007747_120 Hb_000700_100--Hb_007747_120 Hb_000563_460 Hb_000563_460 Hb_000700_100--Hb_000563_460 Hb_001504_270 Hb_001504_270 Hb_000700_100--Hb_001504_270 Hb_002760_060 Hb_002760_060 Hb_000700_100--Hb_002760_060 Hb_003053_060 Hb_003053_060 Hb_000700_100--Hb_003053_060 Hb_003086_050 Hb_003086_050 Hb_000700_100--Hb_003086_050 Hb_008864_080 Hb_008864_080 Hb_007747_120--Hb_008864_080 Hb_005833_020 Hb_005833_020 Hb_007747_120--Hb_005833_020 Hb_007747_120--Hb_001504_270 Hb_008253_040 Hb_008253_040 Hb_007747_120--Hb_008253_040 Hb_000165_220 Hb_000165_220 Hb_007747_120--Hb_000165_220 Hb_002311_490 Hb_002311_490 Hb_000563_460--Hb_002311_490 Hb_000016_220 Hb_000016_220 Hb_000563_460--Hb_000016_220 Hb_011671_290 Hb_011671_290 Hb_000563_460--Hb_011671_290 Hb_009247_020 Hb_009247_020 Hb_000563_460--Hb_009247_020 Hb_073870_020 Hb_073870_020 Hb_000563_460--Hb_073870_020 Hb_000506_140 Hb_000506_140 Hb_000563_460--Hb_000506_140 Hb_006911_060 Hb_006911_060 Hb_001504_270--Hb_006911_060 Hb_000181_080 Hb_000181_080 Hb_001504_270--Hb_000181_080 Hb_000172_080 Hb_000172_080 Hb_001504_270--Hb_000172_080 Hb_001345_030 Hb_001345_030 Hb_001504_270--Hb_001345_030 Hb_000397_090 Hb_000397_090 Hb_001504_270--Hb_000397_090 Hb_078901_010 Hb_078901_010 Hb_001504_270--Hb_078901_010 Hb_033153_010 Hb_033153_010 Hb_002760_060--Hb_033153_010 Hb_000414_100 Hb_000414_100 Hb_002760_060--Hb_000414_100 Hb_174829_040 Hb_174829_040 Hb_002760_060--Hb_174829_040 Hb_001277_150 Hb_001277_150 Hb_002760_060--Hb_001277_150 Hb_001514_040 Hb_001514_040 Hb_002760_060--Hb_001514_040 Hb_002760_060--Hb_011671_290 Hb_015978_030 Hb_015978_030 Hb_003053_060--Hb_015978_030 Hb_000142_010 Hb_000142_010 Hb_003053_060--Hb_000142_010 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_136886_010 Hb_136886_010 Hb_003053_060--Hb_136886_010 Hb_000307_110 Hb_000307_110 Hb_003086_050--Hb_000307_110 Hb_013057_030 Hb_013057_030 Hb_003086_050--Hb_013057_030 Hb_003086_050--Hb_015978_030 Hb_116349_050 Hb_116349_050 Hb_003086_050--Hb_116349_050 Hb_048653_020 Hb_048653_020 Hb_003086_050--Hb_048653_020 Hb_000103_400 Hb_000103_400 Hb_003086_050--Hb_000103_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02971 15.7366 0.504726 1.2937 0.176527 0.66767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0471526 0 0.616647 0.268098 1.52354

CAGE analysis