Hb_000700_130

Information

Type -
Description -
Location Contig700: 215477-216509
Sequence    

Annotation

kegg
ID rcu:RCOM_1721230
description hypothetical protein
nr
ID XP_012085133.1
description PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
swissprot
ID Q8LDV3
description Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=2 SV=2
trembl
ID A0A067JR90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17560 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein At4g13200, chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_130 0.0 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
2 Hb_000922_270 0.1238168092 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
3 Hb_000174_070 0.1259893272 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
4 Hb_003408_020 0.1292422187 - - hypothetical protein RCOM_0453040 [Ricinus communis]
5 Hb_001863_480 0.1294831371 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
6 Hb_004965_070 0.1300435077 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
7 Hb_002235_400 0.1321209324 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
8 Hb_020419_010 0.1332427754 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
9 Hb_157022_020 0.1351703332 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
10 Hb_002411_200 0.1389397191 - - conserved hypothetical protein [Ricinus communis]
11 Hb_014720_080 0.1393973577 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
12 Hb_007666_020 0.1407154957 - - alkaline phytoceramidase, putative [Ricinus communis]
13 Hb_002600_100 0.1438090014 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
14 Hb_011689_040 0.1457867085 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
15 Hb_002735_060 0.1461125633 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
16 Hb_000318_100 0.1465380692 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
17 Hb_000333_090 0.1473874496 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
18 Hb_000010_470 0.1474433747 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
19 Hb_004738_010 0.1475116306 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
20 Hb_002540_030 0.148498587 - - hypothetical protein 32 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000700_130 Hb_000700_130 Hb_000922_270 Hb_000922_270 Hb_000700_130--Hb_000922_270 Hb_000174_070 Hb_000174_070 Hb_000700_130--Hb_000174_070 Hb_003408_020 Hb_003408_020 Hb_000700_130--Hb_003408_020 Hb_001863_480 Hb_001863_480 Hb_000700_130--Hb_001863_480 Hb_004965_070 Hb_004965_070 Hb_000700_130--Hb_004965_070 Hb_002235_400 Hb_002235_400 Hb_000700_130--Hb_002235_400 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_000025_120 Hb_000025_120 Hb_000174_070--Hb_000025_120 Hb_002411_200 Hb_002411_200 Hb_000174_070--Hb_002411_200 Hb_001105_070 Hb_001105_070 Hb_000174_070--Hb_001105_070 Hb_020178_070 Hb_020178_070 Hb_000174_070--Hb_020178_070 Hb_000496_060 Hb_000496_060 Hb_000174_070--Hb_000496_060 Hb_000174_070--Hb_014720_080 Hb_003175_040 Hb_003175_040 Hb_003408_020--Hb_003175_040 Hb_000220_050 Hb_000220_050 Hb_003408_020--Hb_000220_050 Hb_044662_070 Hb_044662_070 Hb_003408_020--Hb_044662_070 Hb_003408_020--Hb_001863_480 Hb_002527_070 Hb_002527_070 Hb_003408_020--Hb_002527_070 Hb_001863_480--Hb_001711_030 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_001439_170 Hb_001439_170 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080 Hb_003732_010 Hb_003732_010 Hb_004965_070--Hb_003732_010 Hb_000340_260 Hb_000340_260 Hb_004965_070--Hb_000340_260 Hb_001832_010 Hb_001832_010 Hb_004965_070--Hb_001832_010 Hb_117134_010 Hb_117134_010 Hb_004965_070--Hb_117134_010 Hb_004965_070--Hb_004738_010 Hb_003052_100 Hb_003052_100 Hb_002235_400--Hb_003052_100 Hb_003050_230 Hb_003050_230 Hb_002235_400--Hb_003050_230 Hb_002235_400--Hb_002411_200 Hb_002235_400--Hb_001711_030 Hb_002681_020 Hb_002681_020 Hb_002235_400--Hb_002681_020 Hb_002235_400--Hb_000922_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.8977 33.1814 8.97537 26.0098 59.5509 59.1426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
263.718 86.2159 130.121 61.9648 20.5695

CAGE analysis